PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv7_160650_nqci.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | Trihelix | ||||||||
Protein Properties | Length: 521aa MW: 57241.2 Da PI: 7.3146 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.8 | 3.4e-19 | 140 | 227 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W++ + +L++a++++ ++l+rg+l++ +Weev++++ r + ++s +qCk+k +nl+kryk +++++++ s+s++p+f+++ea Bv7_160650_nqci.t1 140 EWSDAAIECLLDAYTDKYTQLNRGNLRGRDWEEVAAVVsdRCENQNKSVEQCKNKVDNLKKRYKLERHRMSGA-GVSVSHWPWFKKMEA 227 5*************************************8888899************************9986.77888********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.4E-22 | 138 | 228 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 8.4E-70 | 274 | 514 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 31.591 | 280 | 515 | IPR015963 | Uridylate kinase, bacteria |
SuperFamily | SSF53633 | 2.23E-56 | 281 | 514 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Pfam | PF00696 | 8.1E-23 | 283 | 494 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 3.65E-111 | 283 | 515 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MASCDDDLVI LAGEDHHHHN HNHNHLHHHH FTAQHRYLHP KISSNDVVKV SSTGDSENGA 60 VFEVNHYESS EFDSVPDPES DPKNSRVCVE LTEKRKERER EENDRDLSYG SFKRTKSVSG 120 GGAGGMLISG GGEYRKDREE WSDAAIECLL DAYTDKYTQL NRGNLRGRDW EEVAAVVSDR 180 CENQNKSVEQ CKNKVDNLKK RYKLERHRMS GAGVSVSHWP WFKKMEAIVA NSLPAKSASD 240 EDKIGCSGGS SGRQQKRYSV GTPGSLGQVN NMKSKPISNS KWQRVVFKIS GAALAGNGPH 300 NIDPKVVMLI AREVSMAYRL GLQVAIVIGG RNFFCPDTWT TATGADRSTT HQIGLMASIM 360 NSVLLQSALE KMGVQTRVQT AFALPEVGEP YNRQRAIRHL EKGRVMIFAG VGGGSGNPLF 420 STDTTAALRA TDLNAQAVLK GTNVDAIYDC NSRNNGIMFD HISFREAASR GSTSMDMMAL 480 TFCEENAIPV VVFNLLEPGN ISRALCGEQV GTLIDQTGMI S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
3ek5_B | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
3ek5_C | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
3ek5_D | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
3ek5_E | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
3ek5_F | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
3ek6_A | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
3ek6_B | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
3ek6_C | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
3ek6_D | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
3ek6_E | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
3ek6_F | 3e-59 | 274 | 514 | 1 | 239 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010683919.1 | 0.0 | PREDICTED: uncharacterized protein LOC104898525 isoform X2 | ||||
TrEMBL | A0A0K9RPR7 | 0.0 | A0A0K9RPR7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683919.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |