PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_160650_nqci.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 521aa    MW: 57241.2 Da    PI: 7.3146
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_160650_nqci.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.83.4e-19140227187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         +W++  + +L++a++++ ++l+rg+l++ +Weev++++  r +  ++s +qCk+k +nl+kryk +++++++    s+s++p+f+++ea
  Bv7_160650_nqci.t1 140 EWSDAAIECLLDAYTDKYTQLNRGNLRGRDWEEVAAVVsdRCENQNKSVEQCKNKVDNLKKRYKLERHRMSGA-GVSVSHWPWFKKMEA 227
                         5*************************************8888899************************9986.77888********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-22138228No hitNo description
Gene3DG3DSA:3.40.1160.108.4E-70274514IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.591280515IPR015963Uridylate kinase, bacteria
SuperFamilySSF536332.23E-56281514IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006968.1E-23283494IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.65E-111283515No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MASCDDDLVI LAGEDHHHHN HNHNHLHHHH FTAQHRYLHP KISSNDVVKV SSTGDSENGA  60
VFEVNHYESS EFDSVPDPES DPKNSRVCVE LTEKRKERER EENDRDLSYG SFKRTKSVSG  120
GGAGGMLISG GGEYRKDREE WSDAAIECLL DAYTDKYTQL NRGNLRGRDW EEVAAVVSDR  180
CENQNKSVEQ CKNKVDNLKK RYKLERHRMS GAGVSVSHWP WFKKMEAIVA NSLPAKSASD  240
EDKIGCSGGS SGRQQKRYSV GTPGSLGQVN NMKSKPISNS KWQRVVFKIS GAALAGNGPH  300
NIDPKVVMLI AREVSMAYRL GLQVAIVIGG RNFFCPDTWT TATGADRSTT HQIGLMASIM  360
NSVLLQSALE KMGVQTRVQT AFALPEVGEP YNRQRAIRHL EKGRVMIFAG VGGGSGNPLF  420
STDTTAALRA TDLNAQAVLK GTNVDAIYDC NSRNNGIMFD HISFREAASR GSTSMDMMAL  480
TFCEENAIPV VVFNLLEPGN ISRALCGEQV GTLIDQTGMI S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-592745141239Uridylate kinase
3ek5_B3e-592745141239Uridylate kinase
3ek5_C3e-592745141239Uridylate kinase
3ek5_D3e-592745141239Uridylate kinase
3ek5_E3e-592745141239Uridylate kinase
3ek5_F3e-592745141239Uridylate kinase
3ek6_A3e-592745141239Uridylate kinase
3ek6_B3e-592745141239Uridylate kinase
3ek6_C3e-592745141239Uridylate kinase
3ek6_D3e-592745141239Uridylate kinase
3ek6_E3e-592745141239Uridylate kinase
3ek6_F3e-592745141239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683919.10.0PREDICTED: uncharacterized protein LOC104898525 isoform X2
TrEMBLA0A0K9RPR70.0A0A0K9RPR7_SPIOL; Uncharacterized protein
STRINGXP_010683919.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein