PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_160140_ozqs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 499aa    MW: 57736.2 Da    PI: 7.9311
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_160140_ozqs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.88e-30133218187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+l+L+e+r++++++++++++k+plW+ev++ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Bv7_160140_ozqs.t1 133 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVARIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 218
                         8*************************************999*****************************98..55667*******85 PP
2trihelix50.74.6e-16422492170
            trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                         +W + ev  Li++r++me+r+++ g +++ lWe++++km+  g+ rs++ Ckekw+++n+  k + + ++k
  Bv7_160140_ozqs.t1 422 QWLETEVTRLIQLRTSMESRFQQcGFSEEVLWEDIAAKMAYLGYDRSAIVCKEKWDSINNIIKDEGNKKRK 492
                         7*********************967899*******************************987776665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.27130193IPR001005SANT/Myb domain
PfamPF138371.1E-20132219No hitNo description
PROSITE profilePS500906.876133191IPR017877Myb-like domain
CDDcd122034.03E-20133198No hitNo description
SMARTSM007178.5419482IPR001005SANT/Myb domain
PfamPF138372.3E-12421492No hitNo description
CDDcd122033.41E-20422481No hitNo description
PROSITE profilePS500906.249423480IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEMEDQYGIS DLRQFISRAT VPQFPYNPQP PSLPSSSDLF SAHHHHHRVL SPPAAASQQQ  60
QQQQQYEMVV MGRNMSAAVA ADMLHHNTAT GFLHHHKDPH PYSDSTTTTV TATATATATN  120
SGGFDAADGG AARWPRQETL TLLEIRSRLD HKFKEANQKG PLWDEVARIM SEEHGYQRSG  180
KKCREKFENL YKYYKKTKEG KAGRQDGKHY RFFRQLEALY GDQHNTHHIH HPTTSDNTHH  240
IAGNVPHFHN NPNIIPSNLG NTDNHPILRP TSVSLSNSSE YETSSSDNDV GGSIESEEWK  300
KKKKKGKRSW KAKVKEFIDY QMRKIMDKQE AWLEKMMKTL DSRERERMER EEEWRKQEGE  360
RIEREHKFWA SERAWIEARD SALMTALEKM TNSRDKEASI VVGRDRDRDH YHGRVGIIAN  420
DQWLETEVTR LIQLRTSMES RFQQCGFSEE VLWEDIAAKM AYLGYDRSAI VCKEKWDSIN  480
NIIKDEGNKK RKENYGEGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299307KKKKKKGKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683862.10.0PREDICTED: trihelix transcription factor PTL isoform X2
SwissprotQ9LZS01e-114PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A0K9QYQ70.0A0A0K9QYQ7_SPIOL; Uncharacterized protein
STRINGXP_010683862.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-89Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]