PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_160040_kepw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRF
Protein Properties Length: 422aa    MW: 45760.3 Da    PI: 8.5977
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_160040_kepw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.14.9e-26168211144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Bv7_160040_kepw.t1 168 DPEPGRCRRTDGKKWRCSRDVVAGHKYCERHMHRGRNRSRKPVE 211
                         79***************************************987 PP
2QLQ49.51.3e-1794129237
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          F+ aQ+q+L+ Q+l+y+++aa++ vPpeLlq ++k
  Bv7_160040_kepw.t1  94 TFSLAQWQELELQALIYRHMAAGASVPPELLQLVKK 129
                         59******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.5E-1093129IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.30894129IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-1295127IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.169168212IPR014977WRC domain
PfamPF088795.6E-22169211IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDFNLKQWRD QQHESEEEQQ QTSAKIPRQQ LFFESPQQQQ QQQQQQQEVA ALPLFVSTDS  60
QPNKMSAYSD HSSTPTAIPT STTRFQTRVG GRYTFSLAQW QELELQALIY RHMAAGASVP  120
PELLQLVKKS LLTSSTAPYY LHHYSPHFQP AAAAALLQAG YWGKGAMDPE PGRCRRTDGK  180
KWRCSRDVVA GHKYCERHMH RGRNRSRKPV EFPAAAAAAS AVSSSSVSAG DTLVGSYNTK  240
PSPTFAAGSV AAETQFSLSR SGASSLDAFQ LNQGTSDKKT LFGPQLESSV SGNGGKSNNN  300
GSRVLMHLFD DWPRSENSQG NDISSSTSLS ISTSGNPSSD FLRLSTGNGD ELGLRDGNRN  360
GNEERERAQQ LSWSAGGWGA NPVASMGGPL AEALRSSSNS SPTSVLHQLP RCSAPDTSFV  420
SA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683856.10.0PREDICTED: growth-regulating factor 3 isoform X2
TrEMBLA0A0K9R2780.0A0A0K9R278_SPIOL; Uncharacterized protein
STRINGXP_010683855.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.13e-47growth-regulating factor 4