PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_158660_przp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 380aa    MW: 42570.2 Da    PI: 6.9656
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_158660_przp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.53.2e-2999220199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......................---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTH CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......................ggkke...esktltledesgrsWevkliyrkksgryvltkGW 65 
                         f+k ltpsdv+k++rlv+pk++ae++                       g       +++ l +edesg+ W+++++y+++s++yvltkGW
  Bv7_158660_przp.t1  99 FEKPLTPSDVGKLNRLVIPKQHAEKYfplansnttsdasatvvggdksgG---GgggGGVLLGFEDESGKCWKFRYSYWNSSQSYVLTKGW 186
                         99****************************99998888888886666653...0444999******************************* PP

                         HHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  66 keFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +++vk+++L++gD+v+F ++ r ++ +++++++r+
  Bv7_158660_przp.t1 187 SRYVKEKKLDAGDVVLFDRH-RfESDRFFIGWRRR 220
                         ******************75.4588889****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-3891224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-2896220IPR015300DNA-binding pseudobarrel domain
CDDcd100176.13E-2398210No hitNo description
SMARTSM010191.6E-2299221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.19699221IPR003340B3 DNA binding domain
PfamPF023622.7E-2699220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSHFSLNLPS SDTLWYTPTS MDQQQQQQQQ QQSYHTHQKS LPFFYHSSLS LSSSHDVESD  60
NSSSNNNNNN NNTTTITTNV VDRSETTSST SSFDREYMFE KPLTPSDVGK LNRLVIPKQH  120
AEKYFPLANS NTTSDASATV VGGDKSGGGG GGGGVLLGFE DESGKCWKFR YSYWNSSQSY  180
VLTKGWSRYV KEKKLDAGDV VLFDRHRFES DRFFIGWRRR GSPPVHNPGP APPVQFNHNN  240
NNHHQNYGVV QSQGFNGGPH HHQIASFPSY RPDCLHAGTE VRQKGRKSGG GNSKRVRLFG  300
VNLECQIEEE EEDIEEPQTS DGSSLSSQGQ GQVGSGSGFG INPVAYNYFD YVGYPPNNNY  360
NNHMDMNFPQ DVNQMRNRLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-449623111128DNA-binding protein RAV1
5os9_A4e-44942203113B3 domain-containing transcription factor NGA1
5os9_B4e-44942203113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683640.10.0PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ9FNI34e-60Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A0K9RLB11e-154A0A0K9RLB1_SPIOL; Uncharacterized protein
STRINGXP_010683640.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.23e-53B3 family protein