PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_157000_dced.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 912aa    MW: 100270 Da    PI: 6.9479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_157000_dced.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.6e-19311411199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++   ++++e+  ++++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Bv7_157000_dced.t1 311 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPIKIQDVKGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD- 399
                         99**************************555566778***************9989999999***9.********************876. PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                          e++lv++++++
  Bv7_157000_dced.t1 400 PEGKLVMGFRKA 411
                         777788877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-20308410IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-30308416IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-23309410No hitNo description
PROSITE profilePS5086311.265311412IPR003340B3 DNA binding domain
SMARTSM010194.9E-23311412IPR003340B3 DNA binding domain
PfamPF023621.2E-16311411IPR003340B3 DNA binding domain
PROSITE profilePS5105013.403576626IPR011124Zinc finger, CW-type
PfamPF074965.4E-9581623IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MGLKTCMNIL CGTTSSAEWK IGWNLRSGEL ANLCDKCGYA FEQRIYCEEF HSDDSGWREC  60
VTCGKRLHCG CIASLTLIEL LDGGGVRCIG CARNLDPSLS SNAGKCDGSG ACNVTEYNAG  120
MKHLGNYKEI NKSNQLSVIQ NPNSNIAFGF LKQEELLLPP AQAGSSWVSN LPQSSMGYFQ  180
KARLEVSTSG MQTKDNYGPV GHPNLNIALG VQTGNLQATS NAIVDEREQR KISDTFHQGY  240
VSPNLLPTPP KLAFSPASDT NPSVIPQMRV ARPPVEGRGR HQLLPRYWPR ITDQELQQIT  300
GDSNCTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPIKI QDVKGKEWLF  360
QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK ASNSASLQDA  420
ASSAIRNAPL SSESFFSGVI ENLPVISGSS GLIQSMKGST DTHMNALSRH LDSAGGNVRW  480
HNSEKCNERT EEGMLPTSIQ MLDRKKSRNI GSKSKRLLID DQDVLALRLT WEEVQGMLRP  540
PQSARPSVVV IEDYEFEEYE EPPVFGKTSI FTARSSGAVE QWTQCDNCSK WRRLPGDILL  600
PSKWTCADNV WEQSRCFCSA AEELGPKELE NFRHLSKDAT KRRMVMANRM AQEQESSGLN  660
ALASAAALGD NSNDPGTSSV AATTKHPRHR PGCSCIVCIQ PPSGKGKHKS TCTCTVCMTV  720
KRRFKTLMMR KKKRQSEQEA EIALKNYQKQ NPNRNADKTD PENDNRSQLE HRHRTEDDDL  780
QQVGPTQIND DRVETPISLL AESGKSLDLN CQPDREEDSR TRASEASLTN LLQLASLPLD  840
AYMKQNGLTS LSSEQLAGSK SLLGQATGEA AGKAVDDHSG GQGPQEHVNH SNGSCEPEVK  900
QQSDPLLDSP PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-692894182131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1720731KRRFKTLMMRKK
2720733KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683488.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A0K9Q8H60.0A0A0K9Q8H6_SPIOL; Uncharacterized protein
STRINGXP_010683488.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]