PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_155280_wyee.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 330aa    MW: 35650.5 Da    PI: 10.4485
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_155280_wyee.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13132176347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  Bv6_155280_wyee.t1 132 PWTEDEHRLFLTGLNKVGKGDWRGISRNFVKTRTPTQVASHAQKY 176
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.106.3E-41027IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.9111227IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.611125181IPR017930Myb domain
SuperFamilySSF466895.91E-17127182IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-17128179IPR006447Myb domain, plants
SMARTSM007172.3E-10129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10131176IPR009057Homeodomain-like
CDDcd001672.72E-9132177No hitNo description
PfamPF002499.3E-11132176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAAPPPKTPR TCSQCGNNGH NARTCTELTE LSATAAATAS AGAPVPGFML FGVRLTALDN  60
SPPSPSHSIS PSSSIFRKSM SMNNLSHYEQ QHLPHDHSSL GNVNDIVASG YVSDDALHAS  120
GSRIRERKRG VPWTEDEHRL FLTGLNKVGK GDWRGISRNF VKTRTPTQVA SHAQKYFLRR  180
SNVNRRRRRS SLFDITTDAV SHSSRENQLL GSQDSSCQSK ASASASHHQT TTFASPYPPS  240
LRPISTKHGR SIAILPVPPS SKMASLNLNQ SPTSSPSSSS TSIYNTKERE YEPFLSLKLS  300
QAPSDEESSR RSSPTFGGFN GSGDSIISVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683349.10.0PREDICTED: transcription factor MYB1R1
TrEMBLA0A0K9R9Z71e-122A0A0K9R9Z7_SPIOL; Uncharacterized protein
STRINGXP_010683349.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.22e-60MYB_related family protein