PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_154510_gyua.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

WRKY

Protein Properties

Length: 502aa MW: 54977.5 Da PI: 8.3395

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_154510_gyua.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.4	1.6e-29	202	260	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+ +d +++++tYeg+Hnh+ Bv6_154510_gyua.t1 202 HDGCHWRKYGQKIAKGNPCPRAYYRCTVSpNCPVRKQVQRCPHDMSILITTYEGTHNHP 260 7************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.5E-31	186	262	IPR003657	WRKY domain
SuperFamily	SSF118290	1.02E-26	194	262	IPR003657	WRKY domain
PROSITE profile	PS50811	28.575	196	262	IPR003657	WRKY domain
SMART	SM00774	4.6E-35	201	261	IPR003657	WRKY domain
Pfam	PF03106	5.7E-26	203	260	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
METEISGSSI YNNDQEELLK SAKAKMGEVK EENERLRKLL GQIVKEYQSL EKKISSMERC 60 KPSNETNSSS NNNNKKHKEE DDDGNQQPDL ISLTLGSWSS CNNNKKQTIS DDTLNNKRRK 120 VEDEGGDQLE LGLDYRKFQQ NPTISASNSI KNSSFENSKK EHVKEDENTS CKEGDDQESL 180 HQPQVKKTRV CIRSRCDSPT IHDGCHWRKY GQKIAKGNPC PRAYYRCTVS PNCPVRKQVQ 240 RCPHDMSILI TTYEGTHNHP LPLAATAMAS ATSAAASMIK SNALTSQPPT LSRPLTTSSL 300 GLHTSNLITT FNNNPSLISA SSHNSHPTVT LDLTIPNSGF SSFDWLNPSS YSSSTSSRNS 360 SFLNFSSSPT SSSLPSLDFS SSSLPTSCTS WASGYLLPYS NNNNTKRNMY QNPSNNSQQQ 420 SFNETIAAVA TKAIASNPNF QSVLAAAISS YVGNKTNNND LKVPSSQPTE GGRSLTLFPT 480 QLSSSTTKSN ASVGADTRDH IG

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

METEISGSSI YNNDQEELLK SAKAKMGEVK EENERLRKLL GQIVKEYQSL EKKISSMERC  60
KPSNETNSSS NNNNKKHKEE DDDGNQQPDL ISLTLGSWSS CNNNKKQTIS DDTLNNKRRK  120
VEDEGGDQLE LGLDYRKFQQ NPTISASNSI KNSSFENSKK EHVKEDENTS CKEGDDQESL  180
HQPQVKKTRV CIRSRCDSPT IHDGCHWRKY GQKIAKGNPC PRAYYRCTVS PNCPVRKQVQ  240
RCPHDMSILI TTYEGTHNHP LPLAATAMAS ATSAAASMIK SNALTSQPPT LSRPLTTSSL  300
GLHTSNLITT FNNNPSLISA SSHNSHPTVT LDLTIPNSGF SSFDWLNPSS YSSSTSSRNS  360
SFLNFSSSPT SSSLPSLDFS SSSLPTSCTS WASGYLLPYS NNNNTKRNMY QNPSNNSQQQ  420
SFNETIAAVA TKAIASNPNF QSVLAAAISS YVGNKTNNND LKVPSSQPTE GGRSLTLFPT  480
QLSSSTTKSN ASVGADTRDH IG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-21	188	262	1	74	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010683245.1	0.0	PREDICTED: probable WRKY transcription factor 72
Refseq	XP_019106079.1	0.0	PREDICTED: probable WRKY transcription factor 72
TrEMBL	A0A0K9S2W7	0.0	A0A0K9S2W7_SPIOL; Uncharacterized protein
STRING	XP_010683245.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	6e-50	WRKY DNA-binding protein 72