PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_153700_qttn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 417aa    MW: 46698.6 Da    PI: 6.9724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_153700_qttn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-16165210147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Bv6_153700_qttn.t1 165 RGHWRPAEDSKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 210
                         899*****************************.***********996 PP
2Myb_DNA-binding569e-18217260146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Bv6_153700_qttn.t1 217 RRAFTEEEEERLMQAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 260
                         678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.706160211IPR017930Myb domain
SMARTSM007173.1E-14164213IPR001005SANT/Myb domain
PfamPF002491.6E-15165210IPR001005SANT/Myb domain
SuperFamilySSF466893.07E-28165258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-26166218IPR009057Homeodomain-like
CDDcd001672.84E-13168209No hitNo description
PROSITE profilePS5129427.255212266IPR017930Myb domain
SMARTSM007172.4E-14216264IPR001005SANT/Myb domain
PfamPF002492.0E-14217259IPR001005SANT/Myb domain
CDDcd001679.91E-12219259No hitNo description
Gene3DG3DSA:1.10.10.605.4E-21219265IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MKACPTSVII VTINQNHNNT PPPPSPQSSN SNSLFSNSSS SSCSSMGMSA FPDLTSLSLK  60
KPNSFGAIMA TSEEQSSKNR GFPFVGSFVI PRDPQINEEQ TVFEGKVCDF RDGFVEKHGI  120
STMDLNASCK DENFSEINNS NDNNNHNNHS VNKVGCSKES KVCARGHWRP AEDSKLKELV  180
AIYGPQNWNL IAEKLEGRSG KSCRLRWFNQ LDPRINRRAF TEEEEERLMQ AHRVYGNKWA  240
MIARLFPGRT DNAVKNHWHV IMARKYREQS NEDQQLPSSY NNHGGNDMNI NSNNGFSCAQ  300
QTPLDFFSGP SNQNMVSMFS PSSCLDRPIQ MQMQLQLQQQ QHQSYYYCYN NINPSFSSHQ  360
LFSLPQTDPY SLSSISPSFE AGGNRSIANN NSHLDEQHAT TSSSPSFIDF LGVGTTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-351652657107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683161.10.0PREDICTED: transcription factor MYB28
TrEMBLA0A0K9R5Q71e-133A0A0K9R5Q7_SPIOL; Uncharacterized protein
STRINGXP_010683161.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-73myb domain protein 105