PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_153180_fgrg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 508aa    MW: 55183.6 Da    PI: 7.1714
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_153180_fgrg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.92.5e-34220276259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg+nWrKYGqK+vkgsefprsYY+CtsagCpvkkkvers  d++v+ei+Y+g+Hnh+
  Bv6_153180_fgrg.t1 220 DDGFNWRKYGQKQVKGSEFPRSYYKCTSAGCPVKKKVERSL-DGQVTEIIYKGQHNHQ 276
                         8****************************************.***************8 PP
2WRKY106.81.1e-33394452159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Bv6_153180_fgrg.t1 394 LDDGYRWRKYGQKVVKGNPYPRSYYKCTFQGCNVRKHVERAATDPKAVVTTYEGKHNHD 452
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30206278IPR003657WRKY domain
SuperFamilySSF1182904.71E-26217278IPR003657WRKY domain
SMARTSM007741.3E-38219277IPR003657WRKY domain
PfamPF031062.3E-26220276IPR003657WRKY domain
PROSITE profilePS5081124.776220278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-37379454IPR003657WRKY domain
SuperFamilySSF1182907.98E-30386454IPR003657WRKY domain
PROSITE profilePS5081138.377389454IPR003657WRKY domain
SMARTSM007746.3E-40394453IPR003657WRKY domain
PfamPF031065.1E-26395452IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MAENLTTPSS KPPPSSSRPT ITLPSRAGIE SLFTGSGFGL SPGPMTLVSS FFSENDPDSD  60
CRSFSQLLAG AIASPRPPVE PDHLRFKDSR PPGLMISQQQ QQGGGGFFML SPGLSPATLL  120
DSPGLFPGQG PFGMSHQQAL AQVTAQAAQA QANLHMQSVL QSSLQSGPSE PEPAFTSEVS  180
TQQNTVSSAP DSRETKEAAQ FSGSDQRLQT SSIIVDKPAD DGFNWRKYGQ KQVKGSEFPR  240
SYYKCTSAGC PVKKKVERSL DGQVTEIIYK GQHNHQPPQR RSKDGGNLNE NAGTQGNSES  300
VSQLQASNVN STSEGMAHSA SRREQESSQA TAENMSSDEE EVGNRGTREC GGDEDEPDAK  360
RRNTEVRVIE QAASHRTVTE PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC  420
TFQGCNVRKH VERAATDPKA VVTTYEGKHN HDVPAARMSS HNTANNNSSQ LRPHNSAASN  480
NAYVGNTDFT NSHQQPVALL RLKEERIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-42220455878Probable WRKY transcription factor 4
2lex_A1e-42220455878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683088.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-170WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0K9R3N80.0A0A0K9R3N8_SPIOL; Uncharacterized protein
STRINGXP_010683088.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-154WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]