PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_152840_fucw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 200aa    MW: 22187.6 Da    PI: 4.4878
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_152840_fucw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-191767155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f+t e+Aa a++ a+  l+g
  Bv6_152840_fucw.t1 17 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTQEMAAIAYDVAAFHLRG 67
                        67*****999.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-131767IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-221776IPR016177DNA-binding domain
CDDcd000181.32E-331777No hitNo description
PROSITE profilePS5103223.4461875IPR001471AP2/ERF domain
SMARTSM003805.7E-391881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-321876IPR001471AP2/ERF domain
PRINTSPR003674.7E-101930IPR001471AP2/ERF domain
PRINTSPR003674.7E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEDISSSCVR SRGGIASSYR GVRKRKWGKW VSEIREPGKK TRIWLGSFDT QEMAAIAYDV  60
AAFHLRGRGA HLNFPELADE LPCPANSGAE EIRRAAQEAA AALQSRAAAT GGMNNPYTLQ  120
GGEASAQPSY YNSSSPTRVG LSPMQIQAIN ESPLESPQLW SSMTDTLMMD DNYYYCNNVE  180
MNMNIGWEED EVPDDSLWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-171975663ATERF1
3gcc_A2e-171975663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683050.11e-149PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I22e-52ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0K9RAT41e-86A0A0K9RAT4_SPIOL; Uncharacterized protein
STRINGXP_010683050.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-49ERF family protein