PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv6_152140_jnrj.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | CO-like | ||||||||
Protein Properties | Length: 330aa MW: 37032.2 Da PI: 4.2957 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17 | 1.3e-05 | 4 | 42 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ + ++ + l+Ce ++ lC C +H+ H Bv6_152140_jnrj.t1 4 ECDYCCKNAAVLYCEADSANLCLLCDRDIHSAnslslkH 42 7*****999*********************655555555 PP | |||||||
2 | CCT | 63.4 | 6.9e-22 | 278 | 321 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktR+++K+irYesRKa+A+ R+RvKGrFvk++ Bv6_152140_jnrj.t1 278 RGKAMLRYKEKKKTRRYDKHIRYESRKARADIRQRVKGRFVKAS 321 7789**************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.428 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-6 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.07E-7 | 5 | 35 | No hit | No description |
Pfam | PF06203 | 8.0E-16 | 278 | 320 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.634 | 278 | 320 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MKLECDYCCK NAAVLYCEAD SANLCLLCDR DIHSANSLSL KHIRIPRFGI SNPNSEPKSA 60 IDGCPSASEL APFWGINDLV VPCLGDDEKD AVIQQLVKLS KWDLEEREYS SEIGPGTPSL 120 DAGEGDGSEL LFQNTNFTSL LMKEGETVSV EDRDFMWDFD ADYQPPQEWD GQCGRPFDLD 180 LEESSCASPR VSGDVCEMQC SNILEGSESR DDGGNQTVDN DIFVTLENCS VPSIGLSSDA 240 EMIKPEAIDG EQNFQVMEWP YWRKPLGNTD MEQLAENRGK AMLRYKEKKK TRRYDKHIRY 300 ESRKARADIR QRVKGRFVKA SDTPDEGSGF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU437784 | 0.0 | EU437784.1 Beta vulgaris subsp. vulgaris COL3 (COL3) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010682991.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 14 isoform X2 | ||||
TrEMBL | B3TZZ9 | 0.0 | B3TZZ9_BETVU; COL3 | ||||
STRING | XP_010682992.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33500.2 | 3e-35 | B-box type zinc finger protein with CCT domain |