PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_151580_dcqi.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Trihelix

Protein Properties

Length: 425aa MW: 48077.9 Da PI: 6.8706

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_151580_dcqi.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.2	1.5e-25	79	147	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e++ Li +rr+m++ ++++k++k+lWe++s+kmr+rgf rsp++C++kw+nl k++kk k+++ + Bv6_151580_dcqi.t1 79 WVQDETRSLISLRRDMDSLFNTSKSNKHLWEQISSKMRDRGFDRSPTMCTDKWRNLLKEFKKAKQHSCG 147 ****************************************************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-4	70	140	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.537	71	135	IPR017877	Myb-like domain
SMART	SM00717	8.0E-5	75	137	IPR001005	SANT/Myb domain
CDD	cd12203	3.54E-31	77	142	No hit	No description
Pfam	PF13837	1.1E-18	78	150	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MYISDTSHNP TTNTTTKPPS SSLEFSDDDH NHHDMMIEVV PTHHHQHHHN NHQQQHHQSH 60 CLPAATASSS GPKKRAETWV QDETRSLISL RRDMDSLFNT SKSNKHLWEQ ISSKMRDRGF 120 DRSPTMCTDK WRNLLKEFKK AKQHSCGSAS ASVGASTTGN GNNGSAKMSY YKEIDEILRE 180 RSRSTSSSNA AGYKSPNHNH NNDGINHSSK VDPFLHFSDK GIDDATIPFG PIEANGRPTL 240 NLERRLDHEG HPLAITAADA VTGGGVPPSF WRETPGNGDD PHSFGGRVIT VKWGDYTRRV 300 GVDGTAEAIK DVIRSAFGLR TKRAFWLEDE DQVVRSLDRD MPLATYTLHL DQGMTIKLCH 360 YEDSDHIPYP SQTISHTEEK TFYTEDDFRE FMLRRGWSCL RELNGYRNID NLDDLRPDSL 420 YRGVT

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MYISDTSHNP TTNTTTKPPS SSLEFSDDDH NHHDMMIEVV PTHHHQHHHN NHQQQHHQSH  60
CLPAATASSS GPKKRAETWV QDETRSLISL RRDMDSLFNT SKSNKHLWEQ ISSKMRDRGF  120
DRSPTMCTDK WRNLLKEFKK AKQHSCGSAS ASVGASTTGN GNNGSAKMSY YKEIDEILRE  180
RSRSTSSSNA AGYKSPNHNH NNDGINHSSK VDPFLHFSDK GIDDATIPFG PIEANGRPTL  240
NLERRLDHEG HPLAITAADA VTGGGVPPSF WRETPGNGDD PHSFGGRVIT VKWGDYTRRV  300
GVDGTAEAIK DVIRSAFGLR TKRAFWLEDE DQVVRSLDRD MPLATYTLHL DQGMTIKLCH  360
YEDSDHIPYP SQTISHTEEK TFYTEDDFRE FMLRRGWSCL RELNGYRNID NLDDLRPDSL  420
YRGVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-44	73	173	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00141	DAP	Transfer from AT1G13450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682875.1	0.0	PREDICTED: trihelix transcription factor GT-1 isoform X1
Swissprot	Q9FX53	1e-168	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0K9RAW0	0.0	A0A0K9RAW0_SPIOL; Uncharacterized protein
STRING	XP_010682875.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-164	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]