PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv6_150880_onnf.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | NF-YC | ||||||||
Protein Properties | Length: 146aa MW: 16749.2 Da PI: 9.6026 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48.7 | 1.6e-15 | 7 | 95 | 11 | 98 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 +++t+ n ++P+ r+kki+k+d+d+++is+ea l+s a elf+ l+ +s a e+kr+ +k + av+r + + +fl+d p Bv6_150880_onnf.t1 7 KTSTETLNPSFPIGRVKKIVKFDKDITRISSEALFLVSGASELFLDFLAEKSLEIATEKKRKIVKLDHLRIAVKRHQpTREFLLDSLPV 95 445677799************************************99**************************99764789****9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.19E-17 | 5 | 97 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.2E-18 | 11 | 80 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-17 | 16 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MAEEEEKTST ETLNPSFPIG RVKKIVKFDK DITRISSEAL FLVSGASELF LDFLAEKSLE 60 IATEKKRKIV KLDHLRIAVK RHQPTREFLL DSLPVSLQPL DQPPVDRTVK EKSVLPRNTR 120 RIYSFFRKPL DNDDSRNQAQ VGGEND |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010682780.1 | 1e-101 | PREDICTED: putative transcription factor C16C4.22 | ||||
TrEMBL | A0A0K9RYT1 | 9e-60 | A0A0K9RYT1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010682780.1 | 1e-101 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 7e-42 | nuclear factor Y, subunit C13 |