PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_150690_wmrr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family SBP
Protein Properties Length: 460aa    MW: 50386.2 Da    PI: 8.4873
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_150690_wmrr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.17.7e-41185262178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+++gle+rfCqqCsrfh lsefD++krsCrrrL++hn+rrrk+++
  Bv6_150690_wmrr.t1 185 RCQVEGCNIDLSSAKDYHRKHRVCESHSKCPKVVINGLERRFCQQCSRFHGLSEFDQKKRSCRRRLSDHNARRRKPKP 262
                         6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.5E-34181247IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133183260IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.14E-38184266IPR004333Transcription factor, SBP-box
PfamPF031102.5E-31186259IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSAISMMELN AKSPFLWDWE NLVMFNTKAA EAPKKLQLVD SEIEGIDGFE VGSFYSSGGR  60
SDGGTASDLG YASSSKSSKS ASVDSSTDRE IKGTQFSLET ADCFQQDLRN RKDLVNNSGM  120
ARTSPTIESS AASGESLIAL ELGKRTYFED VSGASNVRTT ARTPLPPDSV TKKSKTSPLS  180
TESPRCQVEG CNIDLSSAKD YHRKHRVCES HSKCPKVVIN GLERRFCQQC SRFHGLSEFD  240
QKKRSCRRRL SDHNARRRKP KPEVIQFNSM RLTSSLYEGR NQLNFSFDQV PMLQTRHGTW  300
DSASDSKVTL AKSGFFNNIK SGGTDELHST HNGLHSPATK ITPVSTQLMP SKGVPSDVFQ  360
RGLPVSVAPS NLGAAQDFRA LSLLSTSSWG SCDPEPSALN HPMHTNHAPL PTMHHPVPLG  420
GPPISSEFWQ ADQPASSGHG SHTSTFQLFK APNESNFYLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-271862591184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241258KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682751.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682752.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682753.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682754.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682755.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A0K9QHU30.0A0A0K9QHU3_SPIOL; Uncharacterized protein
STRINGXP_010682751.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.37e-78squamosa promoter binding protein-like 2