PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv6_150510_oyfw.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | SBP | ||||||||
Protein Properties | Length: 386aa MW: 42129.9 Da PI: 8.4178 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.8 | 1.1e-41 | 97 | 173 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hsk+p v++ g qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Bv6_150510_oyfw.t1 97 CLVDGCKADLSKCRDYHRRHKVCEMHSKTPRVTIGGNVQRFCQQCSRFHSLEEFDEGKRSCRKRLEGHNRRRRKPQP 173 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-34 | 90 | 158 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.932 | 94 | 171 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.71E-39 | 95 | 175 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-30 | 97 | 170 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MGYNLKRNYC DLAKLEKLGI ATILSATFGS SSFETEKKAE GESLVDLKLG SLGDFGKGLA 60 NNFEDHTLYP LMDPFLSTAG SSKRPRIPSS GGQVVSCLVD GCKADLSKCR DYHRRHKVCE 120 MHSKTPRVTI GGNVQRFCQQ CSRFHSLEEF DEGKRSCRKR LEGHNRRRRK PQPEPLPVTH 180 GNFLSASQGS RFLAFNNQPI IPATSVTATW SGGVKSESNP ALYNSAVPSS YSQAYRGRQF 240 PFLQVPETSL SGVSSADQTL HHDGSSNSTQ KSIFCNGLNQ VMDSDRALSL LSSSTAETPE 300 MGLGRMIHHP SPINPTRPML SGLHYNNLAS QYSSQSHGLE GHPESSGLFA NMRSNNSLCQ 360 DVFQNETDAS SASGGGGHQT LSFSWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-28 | 97 | 170 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 170 | KRSCRKRLEGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010682726.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_010682727.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 2e-59 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A0K9R8X4 | 0.0 | A0A0K9R8X4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010682726.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-50 | SBP family protein |