PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv6_150450_zeyz.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | WRKY | ||||||||
Protein Properties | Length: 236aa MW: 27805.3 Da PI: 8.009 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.5 | 1.2e-32 | 157 | 215 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H h+ Bv6_150450_zeyz.t1 157 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLSNDEAVVVTTYEGIHSHS 215 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-33 | 142 | 215 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 149 | 216 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.849 | 152 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-39 | 157 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-26 | 158 | 214 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0010055 | Biological Process | atrichoblast differentiation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MENYSIFSSS TNSSTSSPTN SNFPFSLSQV SSTSNNSFDH HHDLHHHHHV VDHYHDHHDG 60 NQSQPLMMGD QHQIQVPNMV VHHQSHLMNN YHDDHHGITH NYHEDNNNND DQNKRINMVN 120 DHHNSNNNKM IKKGSMEKKK VKKHRYAFQT RSQVDILDDG YRWRKYGQKA VKNNKFPRSY 180 YRCTYQGCNV KKQVQRLSND EAVVVTTYEG IHSHSIERST DNFEHILTQM QIYNSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-25 | 149 | 216 | 9 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 1e-25 | 149 | 216 | 9 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00506 | DAP | Transfer from AT5G13080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF709002 | 1e-44 | JF709002.2 Dimocarpus longan WRKY transcription factor B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010682719.2 | 1e-173 | PREDICTED: probable WRKY transcription factor 13 | ||||
TrEMBL | A0A0K9QLB0 | 1e-72 | A0A0K9QLB0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010682719.1 | 1e-174 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 9e-59 | WRKY DNA-binding protein 75 |