PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_149680_mgka.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Trihelix

Protein Properties

Length: 412aa MW: 45922.8 Da PI: 5.0334

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_149680_mgka.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.1	8.5e-27	54	152	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 rWt+qe+l+Li++++ e+r+rrg+ + +p+W+ vs++++++g++r+p+qC+++w+nl++++kkike+e+ ++es s Bv6_149680_mgka.t1 54 RWTRQEILVLIQGKKVAENRVRRGRtgmlcegqgqgvvQVEPKWATVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDESDSF 144 8********************988889999999999******************************************999999988 PP trihelix 79 cpyfdqle 86 + + ++l+ Bv6_149680_mgka.t1 145 WLMRNDLR 152 98888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-5	54	123	IPR009057	Homeodomain-like
Pfam	PF13837	1.6E-10	54	147	No hit	No description
PROSITE profile	PS50090	6.191	54	124	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MSQRGGQGEE EDEEVMVSMT SKAVVSVDFN HIVTDNNVDE GSRGGVGKAA RLPRWTRQEI 60 LVLIQGKKVA ENRVRRGRTG MLCEGQGQGV VQVEPKWATV SSYCKRHGVN RGPVQCRKRW 120 SNLAGDFKKI KEWESHVKDE SDSFWLMRND LRRDRKLPGF FDREVFDILN NSQTNTPTTA 180 TTTATTTAHF KSGADSDLDA DADTDDMPVV EALFDSGRTA GAHDGLFSDF EYSTQRQRQR 240 QRSEQQDDNE VGVEVGVEVE PEPEPEPELE PGTETGSASL FSPTIPIPIP APTPISEKQF 300 QPKTTEGKGP GTNNEKHRVD LDPEMGSTSH EGRKRRRFSE EDDADGAPDH PIHLQDPLLR 360 VLEKNGRILS SQLEAYNINM KLDREERKDH AANLVAVLNK LADALGRVAD KL

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MSQRGGQGEE EDEEVMVSMT SKAVVSVDFN HIVTDNNVDE GSRGGVGKAA RLPRWTRQEI  60
LVLIQGKKVA ENRVRRGRTG MLCEGQGQGV VQVEPKWATV SSYCKRHGVN RGPVQCRKRW  120
SNLAGDFKKI KEWESHVKDE SDSFWLMRND LRRDRKLPGF FDREVFDILN NSQTNTPTTA  180
TTTATTTAHF KSGADSDLDA DADTDDMPVV EALFDSGRTA GAHDGLFSDF EYSTQRQRQR  240
QRSEQQDDNE VGVEVGVEVE PEPEPEPELE PGTETGSASL FSPTIPIPIP APTPISEKQF  300
QPKTTEGKGP GTNNEKHRVD LDPEMGSTSH EGRKRRRFSE EDDADGAPDH PIHLQDPLLR  360
VLEKNGRILS SQLEAYNINM KLDREERKDH AANLVAVLNK LADALGRVAD KL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	336	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682643.1	0.0	PREDICTED: trihelix transcription factor ASR3 isoform X1
Swissprot	Q8VZ20	1e-65	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	F6HJ64	1e-118	F6HJ64_VITVI; Uncharacterized protein
STRING	XP_010682643.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-67	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]