PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_145700_ctsh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ZF-HD
Protein Properties Length: 342aa    MW: 38639.1 Da    PI: 7.2729
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_145700_ctsh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.93.2e-30112166459
         ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                         ++Y+eC+kNhAas+Gg+a+DGCgEfmps geeg+++ l+C+ C+CHRnFHR+e e 
  Bv6_145700_ctsh.t1 112 IKYRECMKNHAASMGGNATDGCGEFMPS-GEEGSVEFLTCSVCNCHRNFHRKEIEG 166
                         79*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-27112164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-29113164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-23114167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.382114163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.39E-19258329IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-30259330IPR009057Homeodomain-like
TIGRFAMsTIGR015654.8E-28268324IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MELSGHEEGA EIPMPINSAF VGVHGYHHGL MNHRHHHDPS SSSSHNHHNI IPSNNSNGTS  60
TITTTTTILE EDDHPHHHHQ LDCDINDDNC NSGDNHDGHD MGSMKKKMMM IIKYRECMKN  120
HAASMGGNAT DGCGEFMPSG EEGSVEFLTC SVCNCHRNFH RKEIEGQQQQ NKVIIPPPST  180
HSQFYPSTPH SHLLSTRGRK VILGSGVGYP TAGSSAGQLV PFPRSVTINM PYTLSDHHSD  240
DHHHHHGNGG RMMMVSPHHH DHHNQVLKKR FRTKFSQEQK EKMMEFAEKV GWKIQKQEEE  300
VVQQFCQEIG VKRRVLKVWM HNNKHNLGKK SDIIDNNINN PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A6e-232673261675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682105.10.0PREDICTED: zinc-finger homeodomain protein 3
SwissprotO647222e-72ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A061GFH08e-84A0A061GFH0_THECC; Homeobox protein 31
STRINGXP_010682105.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.19e-53homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]