PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_143130_jrau.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family DBB
Protein Properties Length: 442aa    MW: 49495.5 Da    PI: 7.1363
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_143130_jrau.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.5e-07244339
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        e++C+ ++   +  +C+ +  llC +C  + H+       H++
  Bv6_143130_jrau.t1  2 EKTCEFCGAPGAVVYCQADAALLCLSCDAKVHSAnalfsrHSR 44
                        689*****999*********************65777777776 PP
2zf-B_box22.82e-074684439
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htv 39
                         +C+ ++ k+++  C d  +llC++C l  Hk+   H+ 
  Bv6_143130_jrau.t1 46 LICDSCKGKPAHVRCLDHLMLLCQQCDLRLHKSfsnHKK 84
                        68*****************************98888985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.527147IPR000315B-box-type zinc finger
SMARTSM003368.5E-9147IPR000315B-box-type zinc finger
CDDcd000213.59E-6547No hitNo description
PROSITE profilePS5011910.2814387IPR000315B-box-type zinc finger
PfamPF006431.2E-54686IPR000315B-box-type zinc finger
CDDcd000219.29E-54777No hitNo description
SMARTSM003360.214887IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEKTCEFCGA PGAVVYCQAD AALLCLSCDA KVHSANALFS RHSRTLICDS CKGKPAHVRC  60
LDHLMLLCQQ CDLRLHKSFS NHKKLMISSF TGCPSAKHFA ALCGFHFDEL HQFLTLESAA  120
SVISTEPRIG SCSPRQMKFS NHHQWEQNND IVIHQILDLK NLQLTEEDNQ IKSFFHKGEY  180
VTSGISNESL KQQSKELNCF AHELQSLDNL NQVSCSSVGD PFWQYKSPMD NNQFWSQNLQ  240
DLGMCKELGC LGDDFNIPDV DVTFRNFEDL LTGNPDLTQA LFEDSDPMSL DIEKASMNKF  300
ENSRIETTQE ISFASSISTN KHVNYMRETS SPHHIRFSRS ATFSGSRLSA ESSGSDFLDS  360
GNSGNFTRGE SSRNVSGLHG VEVEGWQSSN RIVKEKNKTR FHGKKTQLAP RKAKADMHKK  420
IKSRCSKVQG YESDTATVTK SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681720.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A0K9QNX50.0A0A0K9QNX5_SPIOL; Uncharacterized protein
STRINGXP_010681720.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-21B-box type zinc finger protein with CCT domain