PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_142620_qrgc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family RAV
Protein Properties Length: 399aa    MW: 44192.9 Da    PI: 9.6694
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_142620_qrgc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.9e-1475123155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Bv6_142620_qrgc.t1  75 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 123
                         89****9888.8*********3.....5**********99*************98 PP
2B391.75.6e-29213329194
                         EEEE-..-HHHHTT-EE--HHH.HTT.......................---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTH CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......................ggkke...esktltledesgrsWevkliyrkksgryvltkGW 65 
                         f+kv tpsdv+k++rlv+pk++ae+h                               +++ l +ed + ++W+++++y+++s++yvltkGW
  Bv6_142620_qrgc.t1 213 FEKVVTPSDVGKLNRLVIPKQHAEKHfplqgsnsttttttttsnttntlV---GsgsKGVLLNFEDVNQKVWRFRYSYWNSSQSYVLTKGW 300
                         99***************************977666666665555555441...0444788889999999********************** PP

                         HHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3  66 keFvkangLkegDfvvFkldgrsefelvv 94 
                         ++Fvk++ Lk+gD+v F+++   +++l++
  Bv6_142620_qrgc.t1 301 SRFVKEKSLKAGDIVSFQRSTGPDRQLYI 329
                         ******************87656666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.62E-2775130No hitNo description
PfamPF008473.2E-975123IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1775131IPR016177DNA-binding domain
PROSITE profilePS5103220.45576131IPR001471AP2/ERF domain
SMARTSM003801.4E-3076137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-2176131IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.9E-38210335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-28212323IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-25212320No hitNo description
PfamPF023623.2E-26213328IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506213335IPR003340B3 DNA binding domain
SMARTSM010197.9E-23213333IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEASSMDESS STSDSQVSTT LPPMIVRNMM MVPSAPLPTK ASATAGSLCR MGSGTSVIID  60
SENGIEAESR KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAAQR  120
FRGRDAVTNF KPLSSEDELG AAELRFLNSR SKAEVVDMLR KHTYLDELQQ SRRNFKGDVC  180
NNFGEKGLLH SSSDKSKLSG NNNEGGFGRE QLFEKVVTPS DVGKLNRLVI PKQHAEKHFP  240
LQGSNSTTTT TTTTSNTTNT LVGSGSKGVL LNFEDVNQKV WRFRYSYWNS SQSYVLTKGW  300
SRFVKEKSLK AGDIVSFQRS TGPDRQLYID YKQRSISVEC TPVDVRAAGQ MIRLFGVDIC  360
KLPISVAEVT VNVNGKRLRE MELLAMESSS KKQMVVAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-5521033511118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681667.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM91e-140RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A0J8C8770.0A0A0J8C877_BETVU; Uncharacterized protein
STRINGXP_010681667.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-135related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]