PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_141990_jfsa.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 340aa    MW: 37831.1 Da    PI: 4.828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_141990_jfsa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99e-17112161154
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                         s+y+GVr++k +g+W+AeIrdp    +r  r++lg++ taeeA  a+++ ++++e
  Bv6_141990_jfsa.t1 112 SKYRGVRQRK-WGKWAAEIRDP----IRgVRVWLGTYNTAEEASWAYEQKKLEFE 161
                         89*******9.**********7....246********************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-11112162IPR001471AP2/ERF domain
CDDcd000181.31E-22112153No hitNo description
SuperFamilySSF541716.08E-17112160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-22113160IPR001471AP2/ERF domain
SMARTSM003802.0E-17113167IPR001471AP2/ERF domain
PROSITE profilePS5103219.572113172IPR001471AP2/ERF domain
PRINTSPR003679.3E-10114125IPR001471AP2/ERF domain
PRINTSPR003679.3E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSDFQNPMLT HNSFYSKPKF AGNKTLRKVR VICFDPDMTE SSSEDEERVI RRKRPSGSKK  60
HIIREINLPL NCSNHSVVET ESSCQDSKNG GKNLDKKRRV LDKPSTRKPS SSKYRGVRQR  120
KWGKWAAEIR DPIRGVRVWL GTYNTAEEAS WAYEQKKLEF EALVAEKSQN ASCSAATIST  180
NASHSQQKPA LSEDSGSTVS HNSPSSVLEI DTSASQMNNN AGNGNDETIL REKPSAVPLN  240
DVKDCDIVPV MSSIEEEFQC SEIGQGLDLQ MELESSFVFG GFGEIFADFD VLDDIQLRGF  300
DCQGPIDLPD CDFDLGIEEL AWIDEPRNVA TCCPSFVASN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681556.10.0PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_010681557.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A0K9QMF11e-115A0A0K9QMF1_SPIOL; Uncharacterized protein
STRINGXP_010681556.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-38ERF family protein