PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_141520_usyi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 275aa    MW: 31623.5 Da    PI: 7.5265
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_141520_usyi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-16653148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd  l+++++ +G g+W++ a+  g++Rt+k+c++rw++yl
  Bv6_141520_usyi.t1  6 RGPWTLEEDTSLIHYIHCHGEGRWNLLAKSAGLKRTGKSCRLRWLNYL 53
                        89********************************************97 PP
2Myb_DNA-binding491.4e-1559102146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ +++E++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  Bv6_141520_usyi.t1  59 RGNLSPQEQLMILELHSKWGNR-WSKIAAHLP-GRTDNEIKNYWRT 102
                         7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.016157IPR017930Myb domain
SuperFamilySSF466893.07E-304100IPR009057Homeodomain-like
SMARTSM007175.4E-13555IPR001005SANT/Myb domain
PfamPF002497.4E-16653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-22760IPR009057Homeodomain-like
CDDcd001679.63E-10853No hitNo description
PROSITE profilePS5129419.86758108IPR017930Myb domain
SMARTSM007171.3E-1458106IPR001005SANT/Myb domain
PfamPF002491.2E-1459102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2361107IPR009057Homeodomain-like
CDDcd001672.14E-1063102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEELRRGPWT LEEDTSLIHY IHCHGEGRWN LLAKSAGLKR TGKSCRLRWL NYLKPDIKRG  60
NLSPQEQLMI LELHSKWGNR WSKIAAHLPG RTDNEIKNYW RTRVQKQAKQ LNMECNSQSF  120
IEAIRCYYMP RLVQKIEQNS ADLTSLNTDQ IAPVSHSYMA SSSTKLEHIN SESTKNTSSS  180
NTSYSSIPEF QDLPTSSTSL AYDKAVKSKE NSVLLNNNTH CTINSSCNNY DMDLISMTAS  240
KNPFAECHVE ENDWFGNDMA GDAMWDMDAL WQFRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2511082108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681493.10.0PREDICTED: transcription factor MYB108
SwissprotQ9C9G78e-86MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0K9QG061e-122A0A0K9QG06_SPIOL; Uncharacterized protein
STRINGXP_010681493.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-81myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]