PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_138490_dknq.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Protein Properties

Length: 295aa MW: 34047.5 Da PI: 10.1163

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_138490_dknq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.2	1.5e-13	19	104	8	98
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + l ++ l +p f++++g++ + + l+ ++g+ W+vkl ++ k r++l++GW +Fv+ + g ++F+++g+ +f +v++f+ Bv6_138490_dknq.t1 19 APRLDLHKLEIPTVFMKNYGID--LTDIVYLNIPTGKIWKVKL-VKEKNTRVWLQNGWPKFVEFYSISHGYALMFRYTGSLRF--NVHIFD 104 55666778******999988..555788888******.4666668***********************9986555..999997 PP
2	B3	61	1.9e-19	186	280	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f ++ ps+v s l +p f++e+ e + +l++ +g++W vk ++k +++ + kGWk F+ +n+L++gD++vF+l+++ + Bv6_138490_dknq.t1 186 FAVKMRPSYVQYSFVLNVPSAFFKEYTCT--EAVNFILKNVTGKTWPVKA--NRKHEHVKIYKGWKLFAIDNNLRVGDICVFELMKKgAQN 272 678999******************744..6789***********..******************************9887899 PP ..EEEEE- CS B3 91 elvvkvfr 98 +++v+++r Bv6_138490_dknq.t1 273 SFKVGIIR 280 89999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.43E-20	9	106	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.0E-20	10	106	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.02E-13	11	104	No hit	No description
PROSITE profile	PS50863	11.801	12	106	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-13	13	106	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.6E-11	19	104	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.75E-21	180	280	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-22	182	281	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.47E-19	184	280	No hit	No description
Pfam	PF02362	3.2E-16	186	280	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.817	186	282	IPR003340	B3 DNA binding domain
SMART	SM01019	3.0E-11	186	282	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MTNDDIISGF PSFFKLILAP RLDLHKLEIP TVFMKNYGID LTDIVYLNIP TGKIWKVKLV 60 KEKNTRVWLQ NGWPKFVEFY SISHGYALMF RYTGSLRFNV HIFDMSASEI DYPLRTKTCK 120 RVHKRKIREN NNNEDANMNA PTSSSHKAKG MVGPKRCKFW GNTRGATPEE IKNVESYAYQ 180 CGYPSFAVKM RPSYVQYSFV LNVPSAFFKE YTCTEAVNFI LKNVTGKTWP VKANRKHEHV 240 KIYKGWKLFA IDNNLRVGDI CVFELMKKGA QNSFKVGIIR SCDVAKEEAH IKAEV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680987.1	0.0	PREDICTED: B3 domain-containing transcription factor VRN1
STRING	XP_010680987.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	3e-22	B3 family protein