PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv6_138480_uysd.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | B3 | ||||||||
Protein Properties | Length: 151aa MW: 17369 Da PI: 9.8184 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.4 | 3.1e-19 | 38 | 132 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f ++ltps+v + + +pk+f++++ k++++ + l++++g++W v + +++gr+ lt+GWk F an+L++gD+ +F+l+++ +f Bv6_138480_uysd.t1 38 FATKLTPSSVEYTFNTGVPKEFVKTYLDKEPRTCKFHLQTSTGKTWPVVM-TAGGDGRVKLTEGWKIFTLANKLQVGDISIFELINKLKF- 126 7899**********************77778888****************.5788888*************************9985555. PP .EEEEE- CS B3 92 lvvkvfr 98 +v+++r Bv6_138480_uysd.t1 127 -NVHILR 132 .888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.14E-21 | 32 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-22 | 34 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.67E-20 | 36 | 132 | No hit | No description |
Pfam | PF02362 | 2.5E-17 | 38 | 132 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.451 | 38 | 134 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-14 | 38 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDDKLIISYN RRWPPGLTPE ETKRVRAYYA HNCKHPSFAT KLTPSSVEYT FNTGVPKEFV 60 KTYLDKEPRT CKFHLQTSTG KTWPVVMTAG GDGRVKLTEG WKIFTLANKL QVGDISIFEL 120 INKLKFNVHI LRLANAKENR ENIAINIEEI E |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010681213.1 | 1e-107 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0K9RWT2 | 4e-35 | A0A0K9RWT2_SPIOL; Uncharacterized protein | ||||
STRING | XP_010681213.1 | 1e-107 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-08 | B3 family protein |