PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_136190_cygi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family SBP
Protein Properties Length: 452aa    MW: 49963 Da    PI: 6.5068
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_136190_cygi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.45.6e-40156231277
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         Cqv gC++dls++k+y+rrhkvC+ h+k+p+v+v+g+eqrfCqqCsrfh l efD+ krsCrrrLa hn+rrrk++
  Bv6_136190_cygi.t1 156 CQVLGCNKDLSSCKSYYRRHKVCDLHTKTPKVIVDGIEQRFCQQCSRFHLLAEFDDIKRSCRRRLAAHNKRRRKPH 231
                         **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-31153217IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.385153230IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-36155232IPR004333Transcription factor, SBP-box
PfamPF031101.5E-30156229IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSEGKNVWVS EEVEFPVDGN GCKNKLMGCE MKPYFNVENY PLISNTQALE RLDFMDLGFA  60
DDIRKSYSIS SEPSGEVFSD EIGTDYPSFG EERESGSRTS NDFMQSSKQD FSLVDLKLGR  120
LTDSGIANDS VAEPSMMLSS PAKKARPTLS MRSSNCQVLG CNKDLSSCKS YYRRHKVCDL  180
HTKTPKVIVD GIEQRFCQQC SRFHLLAEFD DIKRSCRRRL AAHNKRRRKP HFTSESGSGI  240
IDFSSLGFPE VMPSVFLGPC KDEEGIEDST KSSDFHLQMG CIREKMDKIP ANVKGTFVDL  300
AKPTIETLSS IQQSSRALSL LSAQSHSMSS QSLETASMTL INNRSHVANA DSNLGHALNH  360
STGFFKTIAQ HGPQPGMYLM EADEEGLTTN NPTNGNVVGL HLPGDSISST PSLRATDSYH  420
PKGHGIVLNL LQLSSHLQRV EQQRHTTENE AG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-261562291184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212229KRSCRRRLAAHNKRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680649.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
TrEMBLA0A0K9RQ591e-166A0A0K9RQ59_SPIOL; Uncharacterized protein
STRINGXP_010680649.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.15e-32SBP family protein