PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_135660_ocpz.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bZIP

Protein Properties

Length: 363aa MW: 41231.8 Da PI: 6.5245

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_135660_ocpz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	3.9e-11	79	107	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k++rr+++NReAAr+sR+RKka+i++Le Bv6_135660_ocpz.t1 79 KVQRRLAQNREAARKSRLRKKAYIQQLEL 107 89*************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-8	71	123	No hit	No description
SMART	SM00338	2.1E-6	75	149	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.921	77	121	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-6	79	121	No hit	No description
Pfam	PF00170	3.7E-8	79	111	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.7E-28	165	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNSSSTQFVM SRRMNIYEPL HQISSWVDSF GDEGYPNVSP STVVEMNERL DNLSEDTSSH 60 GAQAPSNKYD QEASKPVEKV QRRLAQNREA ARKSRLRKKA YIQQLELGRS KLMQMEQELE 120 RVRQQGMYVG GGIDPLPFSA SSVNSGIVAF EMEYGHWVEE QNKLICELRN ALNTHITDIE 180 LRILVDSGMK HYFDLFQLKA GAAKADVFYL ITGMWQTSTE RFFLWIGGFR PSELLKVLGP 240 QLDPLTDQQV MDVYNLKQSC EQAEVALSQG IEKLQQTLAD TIATDHLGDG LYTSEMANNA 300 IEKLEALVSF ANQADHLRRE TLRQMHRILT VRQAARGLLA LGEYFQRLRA LSSLWSSRPR 360 PPA

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNSSSTQFVM SRRMNIYEPL HQISSWVDSF GDEGYPNVSP STVVEMNERL DNLSEDTSSH  60
GAQAPSNKYD QEASKPVEKV QRRLAQNREA ARKSRLRKKA YIQQLELGRS KLMQMEQELE  120
RVRQQGMYVG GGIDPLPFSA SSVNSGIVAF EMEYGHWVEE QNKLICELRN ALNTHITDIE  180
LRILVDSGMK HYFDLFQLKA GAAKADVFYL ITGMWQTSTE RFFLWIGGFR PSELLKVLGP  240
QLDPLTDQQV MDVYNLKQSC EQAEVALSQG IEKLQQTLAD TIATDHLGDG LYTSEMANNA  300
IEKLEALVSF ANQADHLRRE TLRQMHRILT VRQAARGLLA LGEYFQRLRA LSSLWSSRPR  360
PPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680601.1	0.0	PREDICTED: transcription factor TGA4 isoform X1
Swissprot	Q39162	1e-172	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A0K9RI73	0.0	A0A0K9RI73_SPIOL; Uncharacterized protein
STRING	XP_010680601.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-166	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]