PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_135030_oypc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 326aa    MW: 36836.8 Da    PI: 6.88
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_135030_oypc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-191461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lv+ ++++G g+W++ ++  g++R++k+c++rw +yl
  Bv6_135030_oypc.t1 14 KGPWTPEEDQKLVKFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding58.61.4e-1867112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l
  Bv6_135030_oypc.t1  67 RGKFTPEEEQTILNLHAILGNK-WSAIANHLP-GRTDNEIKNFWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.626961IPR017930Myb domain
SuperFamilySSF466894.12E-3311108IPR009057Homeodomain-like
SMARTSM007173.9E-161363IPR001005SANT/Myb domain
PfamPF002495.0E-181461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-251568IPR009057Homeodomain-like
CDDcd001671.21E-121661No hitNo description
PROSITE profilePS5129427.81262116IPR017930Myb domain
SMARTSM007171.2E-1766114IPR001005SANT/Myb domain
PfamPF002491.8E-1767112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2969117IPR009057Homeodomain-like
CDDcd001673.79E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRSPCCDEI GLKKGPWTPE EDQKLVKFIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF TPEEEQTILN LHAILGNKWS AIANHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFSSLPHLI ALANLKELME NNSWEEQAVK LQTEVAKLQY LQYLLQPPTN  180
YPMPNLDMDT LNLLNSLPSA FSTKDFTYNN PDENSPNPFH AIHDHLPDLK TMETSSPNNL  240
ISKDNNNTIN LINHVYHNHQ PPCEFTVLSQ GENSPTSPWL PSSPSPPPIT TAAATTAPLL  300
DGCTTSSAGS FWPDLLLEDS LFHDIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680536.10.0PREDICTED: transcription factor MYB39
SwissprotQ9SBF31e-111MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A068TZV31e-137A0A068TZV3_COFCA; Uncharacterized protein
STRINGXP_010680536.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.11e-101myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]