PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_133850_kaqk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family AP2
Protein Properties Length: 542aa    MW: 59922.3 Da    PI: 6.8642
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_133850_kaqk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.7e-15250309155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Bv6_133850_kaqk.t1 250 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 309
                         57*******************666664478446*************************98 PP
2AP249.79.2e-16352403155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Bv6_133850_kaqk.t1 352 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 403
                         57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.4E-12250309IPR001471AP2/ERF domain
CDDcd000184.71E-23250319No hitNo description
SuperFamilySSF541718.5E-18250319IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-16251319IPR001471AP2/ERF domain
PROSITE profilePS5103219.44251317IPR001471AP2/ERF domain
SMARTSM003801.1E-29251323IPR001471AP2/ERF domain
PRINTSPR003673.8E-6252263IPR001471AP2/ERF domain
CDDcd000186.83E-12352411No hitNo description
PfamPF008474.8E-10352403IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18352412IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-18353411IPR001471AP2/ERF domain
PROSITE profilePS5103219.151353411IPR001471AP2/ERF domain
SMARTSM003801.6E-31353417IPR001471AP2/ERF domain
PRINTSPR003673.8E-6393413IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAPAAASSNW LSFSLSPMEM LATSHHHNHN HQTPQLNLPS PISNSSHHYY LDSFYNTDWG  60
NHQKMYTDYV VDQQIEDHHH HHASSTVPKL EDFFGGDNNN TTSYNSQPES TTQDSSSQLT  120
HLYESTQHHN SAPNYFTNHH QQQQQDLKAF QAAFSTNSGS EVDDSAATHL GCGNGSGTEF  180
VGQSIESTHT ELIPSYTTTT TTNNNNNNNN NNNNGGSLSL AVVPQEKSIV GVDTDNSNKK  240
ISDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQVYLGGY DKEEKAARAY  300
DLAALKYWGP TATTNFPMSN YSKECEDMKH VTKQEFIASL RRKSSGFSRG ASIYRGVTRH  360
HQQGRWQARI GRVAGNKDLY LGTFATEEEA AEAYDIAAIK FRGVNAVTNF EMNRYDVEAI  420
LKSNLPIGGA AKRLKLATEA ADQKPTLSLD QQSHSSNGSS GGGTSSTINF SAIQSVPPIT  480
CVPYDTATAI FHQNLFHHLN SNGGAQAVTS DSYGSGLSSV APMMSLMPQT PAEFYIWPHQ  540
SY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680360.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-162AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2P5EGR70.0A0A2P5EGR7_TREOI; AP2/ERF transcription factor
STRINGXP_010680360.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-159AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]