PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_133580_rsgt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 247aa    MW: 28500 Da    PI: 9.4756
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_133580_rsgt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.9e-32169227159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vk++ +prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Bv6_133580_rsgt.t1 169 LDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHS 227
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33154227IPR003657WRKY domain
SuperFamilySSF1182901.22E-28161228IPR003657WRKY domain
PROSITE profilePS5081129.241164229IPR003657WRKY domain
SMARTSM007743.3E-37169228IPR003657WRKY domain
PfamPF031063.3E-25170226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLNQGLMEDH HQFGISNSQM GFYLNSTNLT NFSPLVNSNN QHHQSNDLKP FNSLLPSSFA  60
LDHVTSTLTQ ALLSSTTPKL REEDYISSSS YNNFPPLFSL QKPTPNYNLW SWGEGKEFQL  120
GGSKRSCNNG DHQDPLLGVS TMKMKKIKAR RKVREPRFCF KTMSDVDVLD DGYKWRKYGQ  180
KVVKNTLHPR SYYRCTQDNC RVKKRVERLA EDPRMVITTY EGRHIHSPSN DLDESQGGLP  240
QLNNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-26161226974Probable WRKY transcription factor 4
2lex_A6e-26161226974Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680328.10.0PREDICTED: probable WRKY transcription factor 13
TrEMBLA0A0K9R4U41e-108A0A0K9R4U4_SPIOL; Uncharacterized protein
STRINGXP_010680328.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-62WRKY DNA-binding protein 13