PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_133250_ytyg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 497aa    MW: 57636.8 Da    PI: 7.5841
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_133250_ytyg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix925.9e-2952136187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe++aL+++r+em+ ++r++ +k+plW+evs++m e g++rs+k+Ckek+en+ k+++++k+g+ ++t++  +t+++fdqlea
  Bv6_133250_ytyg.t1  52 RWPQQETMALLRIRSEMDVAFRDSGSKAPLWDEVSRRMTELGYQRSAKKCKEKFENIYKYHRRLKNGSYGQTNK--KTYRFFDQLEA 136
                         8********************************************************************97554..56*******85 PP
2trihelix94.21.3e-29325409186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+k+ev aL++++++me +++r   k+p Weevs +m+  g+ r++k+Ckekwen+nk+y+++k+++k+r   +s+tcpyf+ l+
  Bv6_133250_ytyg.t1 325 RWPKEEVEALVKIKTNMELEFQRVGPKGPMWEEVSFAMKNSGYDRNAKRCKEKWENINKYYRRVKDSNKQR-HVDSKTCPYFHLLD 409
                         8*********************************************************************8.78889******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.37545109IPR017877Myb-like domain
SMARTSM007170.01949111IPR001005SANT/Myb domain
CDDcd122032.14E-2251116No hitNo description
PfamPF138377.2E-1951137No hitNo description
PROSITE profilePS500907.41318382IPR017877Myb-like domain
SMARTSM007174.6322384IPR001005SANT/Myb domain
PfamPF138376.5E-21324411No hitNo description
CDDcd122033.15E-23324389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MQEISLERRE NEVGKLEKVK ECIEERENEK VKENNGVLIA VAEVESNSAA NRWPQQETMA  60
LLRIRSEMDV AFRDSGSKAP LWDEVSRRMT ELGYQRSAKK CKEKFENIYK YHRRLKNGSY  120
GQTNKKTYRF FDQLEALSHH QISFQTSSSE PTDTFMNDKP FVVSPISSHP QCVPQMAMPT  180
SVNFDSFTIS TSTASTSGSE SEGARTKKRK WADFFDTLMK SVLQKQEALQ NNFLEAIDKC  240
ERDRQAREEA WKMQEMVRIK REQELLTQER SISAAKDAAI LAFLQKISEQ GKCPGISGPM  300
LENVSQEMSI ICQKEKDNGE NSSSRWPKEE VEALVKIKTN MELEFQRVGP KGPMWEEVSF  360
AMKNSGYDRN AKRCKEKWEN INKYYRRVKD SNKQRHVDSK TCPYFHLLDQ LHNLKTKKLD  420
NNKSENSANN LRPEELLLHM MNNHPRQQQQ QEQVVLHREQ GESIMLNGKS NHNEQTGNED  480
TEDHYPVHNS LPVNAVE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680281.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-105TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0K9RRY00.0A0A0K9RRY0_SPIOL; Uncharacterized protein
STRINGXP_010680281.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-110Trihelix family protein