PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_131170_gezt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family SBP
Protein Properties Length: 346aa    MW: 38162.5 Da    PI: 8.3379
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_131170_gezt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.6e-4093169278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dl++++eyhrrhkvCe hsk+pvvlv g+eqrfCqqCsrfh+l+efDe krsCr+rL++hn+rrrk+q+
  Bv6_131170_gezt.t1  93 CSVDGCTSDLNQCREYHRRHKVCERHSKTPVVLVGGKEQRFCQQCSRFHSLEEFDEVKRSCRKRLDGHNRRRRKRQP 169
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.6E-3385154IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.63390167IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.19E-3891173IPR004333Transcription factor, SBP-box
PfamPF031105.3E-3093166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEWDSKTCGW SGVSKLELQD HHHLATFAGS SGSGIINMFS VDLKLGRLED MGDVPRENMK  60
NSMPLNTVSS SPVLALSKRG RPRNSGAQST VLCSVDGCTS DLNQCREYHR RHKVCERHSK  120
TPVVLVGGKE QRFCQQCSRF HSLEEFDEVK RSCRKRLDGH NRRRRKRQPE IFYTPDSAAS  180
FLSSQTGDGM LQFCCPQMHT GNWPTISQPD LYFRNNQETI HQPFLNNEVA PTGSRRGGLK  240
VSPDNTGCAL SLLSRYSSQS PGICVVPTMQ PTTMSSSSAQ GSSTTLHLNN SFSQLSCSQG  300
LEDIESSASF SSSMNNTSAR SFGGFHSARD GLCENGSSRI FPSGWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3084166284squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679998.10.0PREDICTED: squamosa promoter-binding-like protein 16 isoform X1
RefseqXP_010679999.10.0PREDICTED: squamosa promoter-binding-like protein 16 isoform X1
TrEMBLA0A0K9QA891e-172A0A0K9QA89_SPIOL; Uncharacterized protein
STRINGXP_010679997.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-43SBP family protein