PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_129760_jjxg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 314aa    MW: 35674.9 Da    PI: 8.6363
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_129760_jjxg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-18201235135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+ kTp+WR gp g k+LCnaCG++y++ +l
  Bv6_129760_jjxg.t1 201 CSHCGVQKTPQWRAGPMGAKSLCNACGVRYKSGRL 235
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-731286IPR016679Transcription factor, GATA, plant
SuperFamilySSF819953.14E-53987No hitNo description
SMARTSM004018.1E-18195249IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.398199231IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-14199258No hitNo description
Gene3DG3DSA:3.30.50.108.3E-15199233IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.34E-12200248No hitNo description
PROSITE patternPS003440201226IPR000679Zinc finger, GATA-type
PfamPF003201.0E-16201235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MECMVLEDFC SDFTTTFSSG DDFFVDQLLN FNNNEEEDYE QQHQQQQQHE PKIEQQQQQQ  60
QQQQQKQFEQ KLSPTSKKIP HFLSPPLDSV LSVPAEEADL EWLSHFVEES FSQFSTPYPT  120
GLEQPNSKPK PRSRPSNELD ACFAPSNLSK ARRSKRARTG GRVWTAALSF SPEFGPHKKQ  180
KKREFSGPGL INGIGGPVRR CSHCGVQKTP QWRAGPMGAK SLCNACGVRY KSGRLLPEYR  240
PACSPTFSSE LHSNSHRKVL EMRKKKETST GQPESGSFSH PVSSFGYWNL RCGQPDSIKN  300
VLPKLYQNDR LPHQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3740772e-31DQ374077.1 Beta vulgaris chromosome 9 clone BAC137 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679831.10.0PREDICTED: GATA transcription factor 7
SwissprotQ9FH577e-53GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A0K9QER51e-78A0A0K9QER5_SPIOL; Uncharacterized protein
STRINGXP_010679831.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-52GATA transcription factor 5