PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv6_129660_awud.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | SRS | ||||||||
Protein Properties | Length: 228aa MW: 24983.7 Da PI: 7.5588 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 175.1 | 3.2e-54 | 1 | 154 | 22 | 154 |
DUF702 22 eRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...........aeaaskrkrelkskkqsalsstklssaeskkele 101 +RCRtCCksrgfdC thvkstWvpa+ rrer+q+l + +++ +++ ++kr+r+ +++++s+l +t+l+ ++s+++++ Bv6_129660_awud.t1 1 MRCRTCCKSRGFDCVTHVKSTWVPASVRRERHQNLIIQDQHQPQQHqpqqeqehyymGVVNPKRRRD-NNSSSSSLVCTQLPITTSTTSVT 90 7******************************988877777766666566666777653333444444.45666666677666665555444 PP DUF702 102 tss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ +P+evsseavfrcvrvssvd+ +ee+aYqtav+igGhvfkGiLyd+G+++ Bv6_129660_awud.t1 91 NTNtasfsgmelrnFPAEVSSEAVFRCVRVSSVDETDEEYAYQTAVNIGGHVFKGILYDHGPDH 154 44456677777777************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01623 | 6.0E-16 | 1 | 27 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 4.0E-52 | 1 | 153 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 2.5E-27 | 105 | 152 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MRCRTCCKSR GFDCVTHVKS TWVPASVRRE RHQNLIIQDQ HQPQQHQPQQ EQEHYYMGVV 60 NPKRRRDNNS SSSSLVCTQL PITTSTTSVT NTNTASFSGM ELRNFPAEVS SEAVFRCVRV 120 SSVDETDEEY AYQTAVNIGG HVFKGILYDH GPDHPHQSSA PSPSYVAGET GGNLAVRPTA 180 SIGGPTAAAS IMPTSSSSPA VGYLDPSFYP LTYMSPGTPF FSNPNQRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679824.1 | 1e-171 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9SD40 | 5e-50 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A0K9QJA8 | 7e-70 | A0A0K9QJA8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679824.1 | 1e-170 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-46 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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