PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv6_128920_nmax.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB_related | ||||||||
Protein Properties | Length: 77aa MW: 8836.92 Da PI: 9.0601 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1e-08 | 8 | 51 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ ++ +W ++a+ +g ++++++k ++ Bv6_128920_nmax.t1 8 SNWTPKQNKLFEKALALYDKDtqdRWQKVANVVG--KSPEEVKRHY 51 58*******************************8..9********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.306 | 5 | 59 | IPR017884 | SANT domain |
SMART | SM00717 | 3.6E-7 | 6 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-5 | 8 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.73E-13 | 8 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.4E-7 | 9 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.72E-6 | 9 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MASSSCSSNW TPKQNKLFEK ALALYDKDTQ DRWQKVANVV GKSPEEVKRH YEILVEDVKS 60 IERGQVPYPY RPTGHNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-28 | 1 | 76 | 1 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679739.1 | 1e-52 | PREDICTED: protein RADIALIS-like 1 | ||||
Refseq | XP_010679740.1 | 1e-52 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | Q58FS3 | 1e-27 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A0K9R0E3 | 8e-42 | A0A0K9R0E3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679739.1 | 5e-52 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 3e-28 | RAD-like 1 |
Publications ? help Back to Top | |||
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