PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_128660_hwmt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 321aa    MW: 36513.9 Da    PI: 6.6271
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_128660_hwmt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-141462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+ +++  G+g +W + ++++g++R++k+c++rw++yl
  Bv6_128660_hwmt.t1 14 KGPWSPEEDAKLKSYIEAKGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding38.13.7e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T+eE+ ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Bv6_128660_hwmt.t1  69 GGFTEEEENIICSLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.806962IPR017930Myb domain
SuperFamilySSF466892.59E-2511109IPR009057Homeodomain-like
SMARTSM007172.9E-111364IPR001005SANT/Myb domain
PfamPF002494.9E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-241569IPR009057Homeodomain-like
CDDcd001679.77E-81662No hitNo description
PROSITE profilePS5129421.58263117IPR017930Myb domain
SMARTSM007176.8E-1167115IPR001005SANT/Myb domain
PfamPF002498.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2370117IPR009057Homeodomain-like
CDDcd001671.48E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE AKGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEENIIC SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLMVK  120
QRKEQAVSRL LEQEIKRERE SETYLVNQTM NQLPYWSEHQ TLSIPMIHPN HDVHHLGNQE  180
QYTRLMMKIE GQLYDDAQLN NFQYPTQDQL YVVDKSEVQA LAMNSTANMN FTQWLNTDQY  240
DVPGMRMHNQ GQENFAGELE VYFSNQQSID GNESYSGGID VGNSSTTSNS AGSSSWGDIN  300
SIVNTPVSSF DAYQNGVLQA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679693.10.0PREDICTED: transcription factor RAX3
SwissprotQ9M2Y92e-87RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A0K9RLN91e-141A0A0K9RLN9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010679693.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.17e-87myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]