PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_128370_kakc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family RAV
Protein Properties Length: 321aa    MW: 37296.5 Da    PI: 9.8284
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_128370_kakc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.91.4e-093885255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykG+   + +grW A+    +++  +kr+++g+f+    Aa a++ a+ +++g
  Bv6_128370_kakc.t1 38 KYKGIVPQP-NGRWGAQ---LYQD--NKRIWIGTFDCQHVAAHAYDIAAIRFRG 85
                        799998777.8******...5555..4**********99************998 PP
2B3871.6e-27157243184
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+kvltpsdv++++rlv+pk++a+ +   ++  ++++l++ed ++ + W++k++y+k+s+ yvltkGW eFv+++gL+ gD+vvF+ 
  Bv6_128370_kakc.t1 157 FEKVLTPSDVGRLHRLVIPKHYARCYlpVIVDIRGIMLSFEDeRREKIWRFKCCYWKSSQNYVLTKGWGEFVRDKGLRPGDSVVFYT 243
                         99*********************888*956666899******5566***************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-233899IPR001471AP2/ERF domain
PROSITE profilePS5103218.4653893IPR001471AP2/ERF domain
PfamPF008473.9E-63885IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-143894IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-173894IPR001471AP2/ERF domain
CDDcd000184.39E-203893No hitNo description
PRINTSPR003678.2E-73950IPR001471AP2/ERF domain
PRINTSPR003678.2E-77595IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.6E-32152244IPR015300DNA-binding pseudobarrel domain
CDDcd100175.21E-28155254No hitNo description
SuperFamilySSF1019364.32E-28155244IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.2E-20157255IPR003340B3 DNA binding domain
PfamPF023621.6E-24157249IPR003340B3 DNA binding domain
PROSITE profilePS5086313.549157260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MYHNPSSPTI SSTSTEDSTP TKKQPQPQPQ PQPQPRYKYK GIVPQPNGRW GAQLYQDNKR  60
IWIGTFDCQH VAAHAYDIAA IRFRGTQALT NYPLRHYDKP QLHFLASHSK VRIIDILRNQ  120
TYEEELTRFM RSRTKAIRAR RMAPDFEQNL VARERLFEKV LTPSDVGRLH RLVIPKHYAR  180
CYLPVIVDIR GIMLSFEDER REKIWRFKCC YWKSSQNYVL TKGWGEFVRD KGLRPGDSVV  240
FYTTLVGSDL RFSIDTMFKQ HDVEEISDSG NGSNGDHEVE LVFRSKFLRL FGVDICPFIP  300
TSISSSWCDG KGQRITSSVF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2915424111100DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679708.10.0PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
STRINGXP_010679708.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-69related to ABI3/VP1 1