PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_127980_zhxi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 465aa    MW: 52244.5 Da    PI: 5.5847
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_127980_zhxi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.75.7e-84334612372
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal........... 81 
                         ++lL++cA+a++++d++ aq++L+ l+++a pdgd++qRl+  f++AL  r ar ++ +  +l++ +++  + + +++a+           
  Bv6_127980_zhxi.t1  33 EQLLVHCAQAIENNDATPAQQILWVLNNIAPPDGDTNQRLTCAFLRALILRAAR-TPACKFILNSATNT-VTATATATATtatataitntn 121
                         79***************************************************9.44443333333333.33222222223556689999* PP

                GRAS  82 ..................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspes 152
                                             f++++P+++f++ +aN+ Ilea+eg + vHi+D++++ ++Q p+L++++a+R   ++pp++R+T+ +  ++
  Bv6_127980_zhxi.t1 122 ivacglnhiihkfslldlANFVHLTPWHRFGFTAANSVILEAIEGRTGVHIVDLSVTRCMQIPTLIDSIATRYqgRQPPTVRLTVGAFTQQ 212
                         **********9998775545****************************************************966679******9999887 PP

                GRAS 153 g.....skeeleetgerLakfAeelgvpfefnvl.......vakrledl.....eleeLrvkp.......gEalaVnlvlqlhrlldesvs 219
                         +     +  ++ e+g++L +fA++ gv +ef+++        a+ l+++     +++ L  ++       +Eal++n++++ h+l +e+++
  Bv6_127980_zhxi.t1 213 VvppmfDYVSYDELGNKLINFAHSKGVVLEFKAIpttpldgFASVLNEVrtrqqQMRFLYANQegeeeaeEEALVINCQMMAHYLNHEEAN 303
                         79999999**************************9888888444444441111133334333366667779**************977666 PP

                GRAS 220 les.......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                          e        +r+ + k+v+sl P +vvvve+++d +s+ ++er+ +a++y++  fd++++ lpr s++r ++E+e + ++i+nv ++eg+
  Bv6_127980_zhxi.t1 304 DEPssgivvsTRTMFFKAVRSLDPIMVVVVEEDVDFTSSHLVERLRSAFNYFWIPFDTVDTFLPRGSKQREWYEAE-ICWKIENVMSHEGE 393
                         554445555599****************************************************************.************** PP

                GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                         +r+er+e  ++W +r++ea F+pv +  +a++++k++l++++  g+  ++e++ lvl+Wk++++v+++a
  Bv6_127980_zhxi.t1 394 QRVERQEPRARWTQRMMEAEFRPVGFVAEAMAEVKTMLEEHA-TGWGSKKEEEDLVLTWKGHNVVFATA 461
                         ******************************************.88899999999***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.7986444IPR005202Transcription factor GRAS
PfamPF035142.0E-8133461IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MMNRIRPWPG FPTSKPTTLS SSNNHLGDAN CMEQLLVHCA QAIENNDATP AQQILWVLNN  60
IAPPDGDTNQ RLTCAFLRAL ILRAARTPAC KFILNSATNT VTATATATAT TATATAITNT  120
NIVACGLNHI IHKFSLLDLA NFVHLTPWHR FGFTAANSVI LEAIEGRTGV HIVDLSVTRC  180
MQIPTLIDSI ATRYQGRQPP TVRLTVGAFT QQVVPPMFDY VSYDELGNKL INFAHSKGVV  240
LEFKAIPTTP LDGFASVLNE VRTRQQQMRF LYANQEGEEE AEEEALVINC QMMAHYLNHE  300
EANDEPSSGI VVSTRTMFFK AVRSLDPIMV VVVEEDVDFT SSHLVERLRS AFNYFWIPFD  360
TVDTFLPRGS KQREWYEAEI CWKIENVMSH EGEQRVERQE PRARWTQRMM EAEFRPVGFV  420
AEAMAEVKTM LEEHATGWGS KKEEEDLVLT WKGHNVVFAT ALVPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-401246518421Protein SHORT-ROOT
5b3h_E2e-401246518421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679612.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-149SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A0K9QIV00.0A0A0K9QIV0_SPIOL; Uncharacterized protein
STRINGXP_010679612.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-142GRAS family protein