PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_127320_cktt.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

WRKY

Protein Properties

Length: 373aa MW: 40935.1 Da PI: 10.0051

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_127320_cktt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.5	1e-31	302	359	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp+++++tYegeHnh+ Bv6_127320_cktt.t1 302 DDYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERALDDPNMLIVTYEGEHNHT 359 99*********************9888**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.4E-17	258	298	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.9E-33	288	359	IPR003657	WRKY domain
PROSITE profile	PS50811	31.445	295	361	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-27	298	359	IPR003657	WRKY domain
SMART	SM00774	3.3E-38	300	360	IPR003657	WRKY domain
Pfam	PF03106	3.3E-27	302	358	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MAVDLMLGTS SSSSSKLSLS LSSSHMEEAI AHETAAGLQS VHNFLQLLSL KQQQPQNHQT 60 SATSASLTTI NNNNNSNNME IDLNCQVVAD DAVSRFKKVI SLLGRARTGH ARFRRGPVLE 120 INPQQNGVVL CPKPLQQVPP MMRRVILNNN TNHNNNNGYD YTVVPPTATI NFSYSSPVIS 180 AGNSVKSTLT GEMEMKQENF TNHNNNNINN NNTVTPSPAT TTTTTTTTTS FQMTNYSGVV 240 SSVGRPPLSH TSSFKIRKCY SENGKCGGPS GRCHCSKKRK MRVKRIVRVP AISSKMADIP 300 PDDYSWRKYG QKPIKGSPHP RGYYKCSTVR GCPARKHVER ALDDPNMLIV TYEGEHNHTL 360 SVVETSSLIL ESS

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MAVDLMLGTS SSSSSKLSLS LSSSHMEEAI AHETAAGLQS VHNFLQLLSL KQQQPQNHQT  60
SATSASLTTI NNNNNSNNME IDLNCQVVAD DAVSRFKKVI SLLGRARTGH ARFRRGPVLE  120
INPQQNGVVL CPKPLQQVPP MMRRVILNNN TNHNNNNGYD YTVVPPTATI NFSYSSPVIS  180
AGNSVKSTLT GEMEMKQENF TNHNNNNINN NNTVTPSPAT TTTTTTTTTS FQMTNYSGVV  240
SSVGRPPLSH TSSFKIRKCY SENGKCGGPS GRCHCSKKRK MRVKRIVRVP AISSKMADIP  300
PDDYSWRKYG QKPIKGSPHP RGYYKCSTVR GCPARKHVER ALDDPNMLIV TYEGEHNHTL  360
SVVETSSLIL ESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-21	298	360	15	76	Probable WRKY transcription factor 4
2lex_A	2e-21	298	360	15	76	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010679528.1	0.0	PREDICTED: probable WRKY transcription factor 15 isoform X2
TrEMBL	A0A0K9QLS3	1e-172	A0A0K9QLS3_SPIOL; Uncharacterized protein
STRING	XP_010679527.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24240.1	2e-63	WRKY DNA-binding protein 7