PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_126100_ryfn.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

TCP

Protein Properties

Length: 339aa MW: 38704.9 Da PI: 7.576

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_126100_ryfn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.7	2.6e-35	141	283	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec..eaesssssasnsss 87 a kdrhski T+ g+RdRR+Rls+++a+ fF+Lqd+LG+dk+s t+eWLl q+k ai e+ ++s+s+ ++c ++ s+ ++ Bv5_126100_ryfn.t1 141 ASNKDRHSKIRTAHGLRDRRMRLSLQVARPFFKLQDMLGYDKASRTVEWLLLQSKSAIEEILHSKSTSPsgvTKCtiSSTSDDCEV----- 226 678***********************************************************5555524423322111111111..... PP TCP 88 g...........kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + k+++++++ k+++ +++ ke+r+ ar+ra++rt e+m+ + Bv5_126100_ryfn.t1 227 EstiieemkedrKEKRASTCVTKKDEVKQKRKRTTKEERKVARERAKKRTLERMQSR 283 112233444454444444455555555555689999****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.4E-38	142	282	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.686	143	201	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MLRSSSFTNN NTSPILYVDN ILSYLLDDLN PNSKQEDPTT YSTSYYHLPS PLIYNEIDDF 60 VSNHDLEFIQ QALNANNSNN SFNFTDDSSI LDVDNKVVDG SNKGDEINGI VEDGEMNHTI 120 ISSTKKSSTR NNNGGLKKKR ASNKDRHSKI RTAHGLRDRR MRLSLQVARP FFKLQDMLGY 180 DKASRTVEWL LLQSKSAIEE ILHSKSTSPS GVTKCTISST SDDCEVESTI IEEMKEDRKE 240 KRASTCVTKK DEVKQKRKRT TKEERKVARE RAKKRTLERM QSRGRVTGEG SNNFVLDDFD 300 LTENWNPLTT FSYQQSFEDC QTVPNYTIST QQNMVHGPQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695622.1	0.0	PREDICTED: transcription factor TCP18
TrEMBL	A0A0J8BBZ7	0.0	A0A0J8BBZ7_BETVU; Uncharacterized protein
STRING	XP_010695622.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	5e-24	TCP family protein