PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_125870_rycp.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Nin-like

Protein Properties

Length: 1003aa MW: 110463 Da PI: 6.1126

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_125870_rycp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93	2.1e-29	614	665	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Bv5_125870_rycp.t1 614 AEKQISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 665 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.666	604	685	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-26	618	665	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.32E-22	904	992	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.8E-26	908	989	No hit	No description
PROSITE profile	PS51745	24.091	908	990	IPR000270	PB1 domain
Pfam	PF00564	1.5E-18	908	989	IPR000270	PB1 domain
SMART	SM00666	5.5E-25	908	990	IPR000270	PB1 domain
CDD	cd06407	6.24E-37	909	989	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MSEGVAVEEE NQKGEEEKPC FISNHHHHNY NHHQIPRVRE LQSGVTQLHH TIFDPCSSTF 60 MDLDFGDLDA SWSFDQIPTS PVLINGSDQP FSPLWAFADG GPAAVNFSDE RNLPGIRIPI 120 SCGNPSENGG EVGDDGDDKK KISSPGLGFT PLDNFDVSFI IKERMTQALR YFKESTEQNQ 180 ILAQIWAPVK SGDHYVLTTS GQPFVLGPHS NGLNQYRTVS LMYMFSVDGE SVTTLGLPGR 240 VFRQKLPEWT PNVQYYTSKE YPRVNHAKHY NVRGTLALPV LEPSGQSCVG VLELIMTSQK 300 INYAPEVDKV CKALEAVNLK SSEILDHPNI QICNEGRQNA LAEILEVLTE VCETYKIPLA 360 QTWVPCRHRS VLAYGGGLKK SCSSFDGSCM GQVCMSTTDV AFYVVDAHMW GFREACAEHH 420 LQKGQGVAGR SFSSHGLTFC RDISQFCKIE YPLVHYARMF RLTGSFAICL RSKHTGDDDY 480 ILEFFLPLSL TDSAEQLNLL DSILATMKQD LQNLMVASGR TLEEEKKHME IIEVSVDENL 540 GLQLESNLST KPLPATETIN GALPPIKNSQ SQLVETDARN AGKSVAGAGA SQNGITTTEH 600 KETKKTSERK RGKAEKQISL EVLQQYFAGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR 660 KINKVNRSLT KLKRVIESVQ GTDGTFSLTS LGQPTMPVPV GSITWPAGVN GAYQQQSPTS 720 KPDDLPDERS EMPQFSPRVN GQTSGRAASS HEERIPEQNG FVSKAPSGSR EVSAGTSTSH 780 GSCHGSPGTE SKPPNDHFIP NFHEHAGNSI GLFCQQNGEL RLPSGFSMPE ALLAAQHPHE 840 AFGGMLLEDA GSSKDLRNLC VSVAEANVDE VIPEHSWVNQ PCPNPSPRFA MSAAGMTSRF 900 SARPDMKTVT IKATFREDII RFRFSLSSNI VELKEEVAKR FKLEVGTFEI KYLDDDHEWV 960 LIACDSDLHE CLDISKSSGS NMIRLLIQDI FCNLGSSCES SGE

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MSEGVAVEEE NQKGEEEKPC FISNHHHHNY NHHQIPRVRE LQSGVTQLHH TIFDPCSSTF  60
MDLDFGDLDA SWSFDQIPTS PVLINGSDQP FSPLWAFADG GPAAVNFSDE RNLPGIRIPI  120
SCGNPSENGG EVGDDGDDKK KISSPGLGFT PLDNFDVSFI IKERMTQALR YFKESTEQNQ  180
ILAQIWAPVK SGDHYVLTTS GQPFVLGPHS NGLNQYRTVS LMYMFSVDGE SVTTLGLPGR  240
VFRQKLPEWT PNVQYYTSKE YPRVNHAKHY NVRGTLALPV LEPSGQSCVG VLELIMTSQK  300
INYAPEVDKV CKALEAVNLK SSEILDHPNI QICNEGRQNA LAEILEVLTE VCETYKIPLA  360
QTWVPCRHRS VLAYGGGLKK SCSSFDGSCM GQVCMSTTDV AFYVVDAHMW GFREACAEHH  420
LQKGQGVAGR SFSSHGLTFC RDISQFCKIE YPLVHYARMF RLTGSFAICL RSKHTGDDDY  480
ILEFFLPLSL TDSAEQLNLL DSILATMKQD LQNLMVASGR TLEEEKKHME IIEVSVDENL  540
GLQLESNLST KPLPATETIN GALPPIKNSQ SQLVETDARN AGKSVAGAGA SQNGITTTEH  600
KETKKTSERK RGKAEKQISL EVLQQYFAGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR  660
KINKVNRSLT KLKRVIESVQ GTDGTFSLTS LGQPTMPVPV GSITWPAGVN GAYQQQSPTS  720
KPDDLPDERS EMPQFSPRVN GQTSGRAASS HEERIPEQNG FVSKAPSGSR EVSAGTSTSH  780
GSCHGSPGTE SKPPNDHFIP NFHEHAGNSI GLFCQQNGEL RLPSGFSMPE ALLAAQHPHE  840
AFGGMLLEDA GSSKDLRNLC VSVAEANVDE VIPEHSWVNQ PCPNPSPRFA MSAAGMTSRF  900
SARPDMKTVT IKATFREDII RFRFSLSSNI VELKEEVAKR FKLEVGTFEI KYLDDDHEWV  960
LIACDSDLHE CLDISKSSGS NMIRLLIQDI FCNLGSSCES SGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695590.1	0.0	PREDICTED: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0J8BC07	0.0	A0A0J8BC07_BETVU; Uncharacterized protein
STRING	XP_010695590.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]