PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_125450_qcwx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 334aa    MW: 37502.9 Da    PI: 6.3971
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_125450_qcwx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.8e-191562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+lv +++ +G g+W++ +r  g++R++k+c++rw +yl
  Bv5_125450_qcwx.t1 15 KGPWTPEEDEKLVSYIQNHGHGSWRALPRAAGLNRCGKSCRLRWTNYL 62
                        79********************************************97 PP
2Myb_DNA-binding58.71.3e-1868113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rgr+T+eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  Bv5_125450_qcwx.t1  68 RGRFTEEEEDMIIKLHSVLGNK-WSRIAAHLP-GRTDNEIKNYWNTHL 113
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4111062IPR017930Myb domain
SuperFamilySSF466892.79E-3213109IPR009057Homeodomain-like
SMARTSM007171.6E-141464IPR001005SANT/Myb domain
PfamPF002499.4E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-251669IPR009057Homeodomain-like
CDDcd001673.90E-111762No hitNo description
PROSITE profilePS5129428.94463117IPR017930Myb domain
SMARTSM007175.6E-1867115IPR001005SANT/Myb domain
PfamPF002497.0E-1768113IPR001005SANT/Myb domain
CDDcd001671.11E-1370113No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2870117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRSPCCDDI SELKKGPWTP EEDEKLVSYI QNHGHGSWRA LPRAAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FTEEEEDMII KLHSVLGNKW SRIAAHLPGR TDNEIKNYWN THLRKKLLQM  120
GIDPVTHKPR TDLNILSNLS QLFSTSPNLS TLMNPWNINN ALRIQPNVAA EVAKLQVLQN  180
IFQILNTSNN TSSSLPNMDQ TMPLNLGYPN VNGFGNLNNT NNAMCSTSQG FCHVPNYVGP  240
NQTIVDELYP NLDSNNSNKS LSISTSTYET LDENRLPSLV NISPEASTVN QIESNTNSTN  300
GSSAAFTPTT ADFFEGWEKL LDDGNSDFWK EFIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30101172108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695546.10.0PREDICTED: transcription factor MYB39
TrEMBLA0A0J8B8I50.0A0A0J8B8I5_BETVU; Uncharacterized protein
STRINGXP_010695546.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-89myb domain protein 9