PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_125320_knac.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 359aa    MW: 40074.4 Da    PI: 8.9554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_125320_knac.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.2e-1689134147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v q+G+++W++Ia+++  gR++k+c++rw++ 
  Bv5_125320_knac.t1  89 RGHWRPAEDAKLKQLVLQFGPHNWNLIAEKLD-GRSGKSCRLRWFNQ 134
                         899*****************************.***********996 PP
2Myb_DNA-binding57.72.6e-18142185247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+  
  Bv5_125320_knac.t1 142 RPFTEEEEERLKTAHKMYGNK-WAVIARLFP-GRTDNAVKNHWHVM 185
                         69*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.98584135IPR017930Myb domain
SMARTSM007174.5E-1388137IPR001005SANT/Myb domain
PfamPF002496.3E-1589134IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-2889182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-2690141IPR009057Homeodomain-like
CDDcd001674.45E-1292133No hitNo description
PROSITE profilePS5129426.317136190IPR017930Myb domain
SMARTSM007178.4E-17140188IPR001005SANT/Myb domain
PfamPF002491.6E-15141185IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-21142186IPR009057Homeodomain-like
CDDcd001673.97E-13143186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSIELMGVTM KKTNHNKNNL KPTSKPTYSP ALELCLSNPK PEYEITKMGL QKLSSVPQME  60
VLRGQKCHEN HEVIVIKKEN NGASKLCSRG HWRPAEDAKL KQLVLQFGPH NWNLIAEKLD  120
GRSGKSCRLR WFNQLDPRIN KRPFTEEEEE RLKTAHKMYG NKWAVIARLF PGRTDNAVKN  180
HWHVMKAREE REKSSFFTRK RNHIKCESTI SNNNNNDNNN YNMGDESGGA STCTELSLST  240
ISGPDPGMGV NCGYGCLGGI SYNQVCQQQH HQPCNSDSQK GTIVEGLCTL ARKGPNCFDN  300
TIGKKATEMC RVELCGQSDT YSEASGSGDS VVNSGLSSIV VGKFNYNLPF INFLGLKAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29891827100B-MYB
1mse_C3e-2986182197C-Myb DNA-Binding Domain
1msf_C3e-2986182197C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695522.10.0PREDICTED: myb-like protein Q
TrEMBLA0A0J8B9J10.0A0A0J8B9J1_BETVU; Uncharacterized protein
STRINGXP_010695522.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-64myb domain protein 105