PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_124680_rnqu.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

WRKY

Protein Properties

Length: 185aa MW: 21341 Da PI: 9.2431

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_124680_rnqu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.6	1.1e-32	106	164	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt+ gC+vkk+v+r ++d++vv++tYeg H+h+ Bv5_124680_rnqu.t1 106 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHGGCNVKKQVQRLTKDEEVVVTTYEGIHTHS 164 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.9E-33	91	164	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-29	98	165	IPR003657	WRKY domain
PROSITE profile	PS50811	29.539	101	166	IPR003657	WRKY domain
SMART	SM00774	8.4E-38	106	165	IPR003657	WRKY domain
Pfam	PF03106	1.4E-26	107	163	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MENNNTTTTC PFSPTPIDNF RLPTADISPT YPPPMSTTLI DVYNNGLLGT KPEIDIDYQH 60 DHGKSFGLEF GSSSGGIKES IKKDNKEKKL RRHRYAFHTR SQVDILDDGY RWRKYGQKAV 120 KNNKFPRSYY RCTHGGCNVK KQVQRLTKDE EVVVTTYEGI HTHSVERSTD NFEHILKQMQ 180 IYVPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-26	96	165	7	76	Probable WRKY transcription factor 4
2lex_A	4e-26	96	165	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695387.1	1e-138	PREDICTED: probable WRKY transcription factor 75
TrEMBL	A0A0K9RFI3	6e-72	A0A0K9RFI3_SPIOL; Uncharacterized protein
STRING	XP_010695387.1	1e-137	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	4e-57	WRKY DNA-binding protein 75