PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_123800_oiiq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 1517aa    MW: 169876 Da    PI: 7.4873
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_123800_oiiq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.24.9e-07229251326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++Cr+++r G+C++G+ Ck+ H+
  Bv5_123800_oiiq.t1 229 RSPCRNYLR-GQCNFGAFCKRWHP 251
                         689******.**********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2636895IPR000571Zinc finger, CCCH-type
SMARTSM003560.00156894IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033141166IPR000571Zinc finger, CCCH-type
SMARTSM003560.0087227252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.793227253IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5229251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.051278305IPR000571Zinc finger, CCCH-type
SMARTSM003561.1279304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817407434IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4408433IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4411436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5096926.05812681447IPR004274FCP1 homology domain
Gene3DG3DSA:3.40.50.10004.4E-1112691458IPR023214HAD-like domain
SuperFamilySSF567842.39E-1912691458IPR023214HAD-like domain
SMARTSM005772.8E-712711431IPR004274FCP1 homology domain
PfamPF030311.4E-2212731454IPR004274FCP1 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1517 aa     Download sequence    Send to blast
MEQAVAERPI SQERHIGQLH MQHDGTVNSS GGQSEKDPLG RWCVRRSTGW RGSIPSDSFR  60
GDHLGRDNFQ RPVCRDNLRG SCVRGAFCKY QHSDSDGHDR SRFYHDGREN LGAVANFGNS  120
QICRENQDRD STSRYSSGGY RSRSPCRRFQ SGRCYHGASC RYLHPESTSY DRLTHGVIVE  180
QRQEDEAVRD SCLVGENKDS TLRISQEHGE VDKENSSRPI PFSGEHRSRS PCRNYLRGQC  240
NFGAFCKRWH PVTLSISREH DEANMHNHFR VGAFSRDPRS RSLCQSFLRG KCYRGTSCVD  300
LHPVTVQDRT RYDSWGVQQH QGAPVNPHLC DGSIASPLRI SLNHERCKNH EIQSHRDMHV  360
VFERNKEWPT KDGMQLAGNR ENFDITSRKW SYQRQRGSSA NDFGGDKRTR EVCLQFTKGR  420
CKSGDLCRYL HGYHEYATSN WSDKSYTEAA GHSRNFGITN QNVNTMMGQE HADAKNYKMS  480
LVESVHTESS QIGCTNKETR GRSVDDAIKP NILDHKVHVP TVGYKCEVSG EKTTSFCNSS  540
DNHEDISLWS QPFKRRRSMS QSPITPNNNF HCRNFREYDS RVNLRGGRCS NVGRFQYPDH  600
HSYRYEKPMY HANNQQRTEG EAILGNPCSQ QCNDPKLVTS QRHDEVVSQD RQLDQCFRGS  660
LGSNIAIVRK KAEAEFGGCT LKASCTDPND GELATCSNAV DNITCAAAIN QEVLGSDSTR  720
SSEEHDVSPA AIDSSVLEEG PVGLNNNMGQ ETNESSAELM PMIKTYSRKK RKKRGSKSAS  780
CEEILEEEVT DASEQGTTTT LCNPNVVSVS GIPVEMMKSA SKNNDLENMD MHDHPVKQQK  840
RKWKRKLLCV ASSEEIMKEV VIDASNKGTL ISSLAETHST NPDVVSVSGV PVDTKMSDPE  900
NGNLGNVLVP DQSVKQKAEK KHRKKRTGSG LCDENKKEEI SDASEQGMAI SSLVETSCSK  960
SNIVSVTDAA VDMKLSASEN NESGNVVLPD LPVIRNVKKK RKNKCPGSGS FEANKEEERS  1020
DTSKQGMPIS SLVEIVSVTG VAVDMKMIAS ENNELENVLS HDLPVIQKVK KKRKKKCPGS  1080
GSFEENKEEI SDASIQGMPI SCLVETSWSE PNIGPVTGVP VDTNLSAAEN KETENVPLHD  1140
LPVISKVNKK HKKRCPGSGS FEENKIQEIS DSLKQGSPIS SLVETSWSKQ NIVPVTGVAV  1200
DTNLSASENN ESENVILHDL PVKQQENGCR TNEIEKNVEP ALDGTLLVGN TDDHSLQTLQ  1260
YPSRTVVYSS TRKLLVLDVN GLLADIVTKG EYSHYYKPDI IVSGKGVFKR PFCDDFLQFC  1320
FERFDVGIWS SRLMKNLTQV VDYLMEDTKE KLLFCWDRAY CTLTQYSTLE SRRKPLVLKE  1380
LRYLWGGNWC HLPYYDETNT VLLDDSPYKA LRNPPYTAIF PEPYTYRHRR DRALGPCGEL  1440
RVYLERLAEA DNVQKFIQEN PFGQRPITAA SPSWQFYAKI VSSLASQQGE SACVTPSPDS  1500
PQCSIAVNKP ASKLNGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1839846KRKWKRKL
29961003VKKKRKNK
310691075KKKRKKK
410701074KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695241.10.0PREDICTED: uncharacterized protein LOC104907914
RefseqXP_019108247.10.0PREDICTED: uncharacterized protein LOC104907914
TrEMBLA0A0K9Q8W90.0A0A0K9Q8W9_SPIOL; Uncharacterized protein
STRINGXP_010695241.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.12e-06floral homeotic protein (HUA1)