PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_123760_mqgh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TCP
Protein Properties Length: 393aa    MW: 43768.1 Da    PI: 7.4196
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_123760_mqgh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP84.33e-2656154366
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................ 65 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl   k+ i++l+ +                            
  Bv5_123760_mqgh.t1  56 GGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDTTKHDIDKLPPLpvipgtfapsqgygvpfssttpffdanl 146
                         78*************************************************************7777766666666665543333333333 PP

                 TCP  66 .......s 66 
                                +
  Bv5_123760_mqgh.t1 147 lssrkevG 154
                         32222220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.9657115IPR017887Transcription factor TCP subgroup
PfamPF036345.7E-2157136IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MTSLRDKDEG AHVYNTKQEV GESTKSSLAA SSSSNSRQWS SGFKNPRIVR VSRTFGGKDR  60
HSKVCTIKGL RDRRIRLSVP TAIQLYDLQD RLGLSQPSKV IDWLLDTTKH DIDKLPPLPV  120
IPGTFAPSQG YGVPFSSTTP FFDANLLSSR KEVGININSA TQDVDVDEED ESIVAKLKYW  180
DSNAMMRSKQ KGVDHHDHQG TSQVLAQNLF PIASANNNNN NSTSILPPQQ PSFLSNNPML  240
NYYHLEPSNL SLTQLGSLGL SSSHHNDHHN QGSSQTSSTP QQLPPSSLSL SSMSQLFLYP  300
SMTTTSFFPQ HHHSSFMNNS HQHQLENDMR QFSRFPFSNN PFSSSNFHNS SGLDMKPSFN  360
TSMNNHDPHM QQGDDEDSQG KNSHNPWKQS SGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1962116155Putative transcription factor PCF6
5zkt_B5e-1962116155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695237.10.0PREDICTED: transcription factor TCP17
TrEMBLA0A0K9RR591e-133A0A0K9RR59_SPIOL; Uncharacterized protein
STRINGXP_010695237.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5