PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_122850_jkmd.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

GRAS

Protein Properties

Length: 835aa MW: 91490.2 Da PI: 6.2253

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_122850_jkmd.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	282.4	1.3e-86	473	834	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +++L+++A+ + +g+++laq++Larl+++ ++p+ R+a y++eAL+ l+ ++ ++ a pp++ ++++++++++a+k+fsevsPi + Bv5_122850_jkmd.t1 473 KDQLFKAADLILTGNFSLAQEILARLNHQLPLPAKPLVRAALYVKEALQMLLLM-GNPVA-APPPKALTPYDVVHKMNAYKVFSEVSPITQ 561 689**********************************************997.55555.789999999***************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 f ++t qaIlea++ ++++HiiDfdi+ G+QW++++q+L R++g+psl+iT++++ + ++ el ++e+L +fA+ +g+ fe +v+ Bv5_122850_jkmd.t1 562 FVNFTSTQAILEALDDADAIHIIDFDIGCGAQWASFIQELPLRKRGAPSLKITALAPLSVTNPFELGLIRENLVQFANDIGLAFELQVVNL 652 *****************************************************9999***********************955 PP GRAS 184 k..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 + + + ++ ++r +++Ea+aV++ + + + +L+++k+ sPk+vv ++ d+++ +F ++++++++ ++ +++sl+ Bv5_122850_jkmd.t1 653 DmfDPSLCSMPNFRASEDEAIAVSIPIWCSSNR--PSI----LAPLLQFIKQQSPKIVVSLDRGFDRSDVPFPQHLVHTVDSCTNFLESLD 737 52233445677778888*****9555443..333....346*****************************************7 PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 +s+ +kvE++++++ i+n v+ + + e++ +W++ + +aG++pv++s+++++qa++++++++++g++ve+++ slvl W+ Bv5_122850_jkmd.t1 738 GL-NVASDIVNKVEKFFVQPMIENTVMGRVQF----PEKMPHWKNLFASAGLSPVQFSNFTETQADYVVKRTPGRGFHVEKRQSSLVLSWQ 823 65.579999*************976665....9************************************************** PP GRAS 364 drpLvsvSaWr 374 +r+Lv++SaWr Bv5_122850_jkmd.t1 824 RRELVAASAWR 834 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.363	446	814	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.7E-84	473	834	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MRAMPYNLQG KGVVEVSGGI ISQISSSVVA APKWKSIEKK KKLEEEEEIE EEEEEEIQVY 60 SSLVKQISGS NNNSGRGTSS IESEPTSTLD TTRRSPSPPT STSTLSSSFT NGNKTDNTTA 120 GVADPACARK EDWPSDLQQH HHLHQHQHQH HGSDNVTAGA GAAAAAATAT ATAAAGAASV 180 GLDDWDTMFP TGEGALLPWI IGDPEDASLG LKHLLQSGGG GTNHLDYEGN AGLGVVDQGP 240 GFESHSQSQS LSPPSQQQLM PHHSLPVVCG EGNNGNLGYL GSEFGNNGKI SMFSHNCTSG 300 ILEGKVSNNG NGLNHSNSML LGSIPPHQHQ QYEVGDEKPQ IFNPQMMMNA QQAQSLGNPS 360 FLIPQLGFCQ LDQHLFQPPT KRHNPGVVLD PNLVGKNPFH DQGHDFLLRK QQQQQQGFQQ 420 MPMSFPPNLL PPHLQQKPMM VPKQNHHQQQ QQQQHFPLPV LHQQQQQQEQ AIKDQLFKAA 480 DLILTGNFSL AQEILARLNH QLPLPAKPLV RAALYVKEAL QMLLLMGNPV AAPPPKALTP 540 YDVVHKMNAY KVFSEVSPIT QFVNFTSTQA ILEALDDADA IHIIDFDIGC GAQWASFIQE 600 LPLRKRGAPS LKITALAPLS VTNPFELGLI RENLVQFAND IGLAFELQVV NLDMFDPSLC 660 SMPNFRASED EAIAVSIPIW CSSNRPSILA PLLQFIKQQS PKIVVSLDRG FDRSDVPFPQ 720 HLVHTVDSCT NFLESLDGLN VASDIVNKVE KFFVQPMIEN TVMGRVQFPE KMPHWKNLFA 780 SAGLSPVQFS NFTETQADYV VKRTPGRGFH VEKRQSSLVL SWQRRELVAA SAWRC

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MRAMPYNLQG KGVVEVSGGI ISQISSSVVA APKWKSIEKK KKLEEEEEIE EEEEEEIQVY  60
SSLVKQISGS NNNSGRGTSS IESEPTSTLD TTRRSPSPPT STSTLSSSFT NGNKTDNTTA  120
GVADPACARK EDWPSDLQQH HHLHQHQHQH HGSDNVTAGA GAAAAAATAT ATAAAGAASV  180
GLDDWDTMFP TGEGALLPWI IGDPEDASLG LKHLLQSGGG GTNHLDYEGN AGLGVVDQGP  240
GFESHSQSQS LSPPSQQQLM PHHSLPVVCG EGNNGNLGYL GSEFGNNGKI SMFSHNCTSG  300
ILEGKVSNNG NGLNHSNSML LGSIPPHQHQ QYEVGDEKPQ IFNPQMMMNA QQAQSLGNPS  360
FLIPQLGFCQ LDQHLFQPPT KRHNPGVVLD PNLVGKNPFH DQGHDFLLRK QQQQQQGFQQ  420
MPMSFPPNLL PPHLQQKPMM VPKQNHHQQQ QQQQHFPLPV LHQQQQQQEQ AIKDQLFKAA  480
DLILTGNFSL AQEILARLNH QLPLPAKPLV RAALYVKEAL QMLLLMGNPV AAPPPKALTP  540
YDVVHKMNAY KVFSEVSPIT QFVNFTSTQA ILEALDDADA IHIIDFDIGC GAQWASFIQE  600
LPLRKRGAPS LKITALAPLS VTNPFELGLI RENLVQFAND IGLAFELQVV NLDMFDPSLC  660
SMPNFRASED EAIAVSIPIW CSSNRPSILA PLLQFIKQQS PKIVVSLDRG FDRSDVPFPQ  720
HLVHTVDSCT NFLESLDGLN VASDIVNKVE KFFVQPMIEN TVMGRVQFPE KMPHWKNLFA  780
SAGLSPVQFS NFTETQADYV VKRTPGRGFH VEKRQSSLVL SWQRRELVAA SAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-22	460	833	7	378	Protein SCARECROW
5b3h_A	1e-22	460	833	6	377	Protein SCARECROW
5b3h_D	1e-22	460	833	6	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695124.1	0.0	PREDICTED: scarecrow-like protein 6
TrEMBL	A0A0J8E420	0.0	A0A0J8E420_BETVU; Uncharacterized protein
STRING	XP_010695123.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	6e-89	GRAS family protein