PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_122550_anjp.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

MYB_related

Protein Properties

Length: 438aa MW: 48985.8 Da PI: 9.7945

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_122550_anjp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3.2e-07	129	172	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE + l d ++++ + + +Ia +++ Rt +++k+r++++ Bv5_122550_anjp.t1 129 KWTKEETDTLFDFCERFDLR-FILIADRFPSPRTVEELKDRYYNV 172 8*****************.*****66*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	7.2E-31	102	176	IPR032563	DAMP1, SANT/Myb-like domain
SuperFamily	SSF46689	9.79E-7	126	174	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-8	126	175	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-6	128	174	IPR009057	Homeodomain-like
CDD	cd11658	1.26E-17	130	173	No hit	No description
Pfam	PF05499	1.3E-6	308	371	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MDAKDILGLP KNALLNSQEK KAKPPKEPQR KPDGISREVY MLTGGVAPLM PAIDASQLKK 60 RPPTDEKVTW QWLSFTNSAR KDNLELYHWV RVVNGVPPTG DYPFAKYNKS VEVIKYTDEE 120 YEKYLTDPKW TKEETDTLFD FCERFDLRFI LIADRFPSPR TVEELKDRYY NVCRAILIAR 180 APSPADVSGH PLVKEGYNAK QETERKRALS MVLSQTKLQE RKDAEVLAEA KRIQESRMLA 240 KGAEEPELPS ASDVGAEHAD RIALPGSVSP VAAAPTAAAD NATQASLRML RVYLRTYALD 300 QMVQAASASA GLRTIKRVEQ TLQDLGVNLK PKIPTKAVCS EHLELRKEIL TLLNLQKQLQ 360 YKEAEGSSYR EGSFTETPGT PKRTPRPGDQ DRPFVPEPLS FGGDRVGKRD QKRKGPGRSS 420 DAPSSPATKR ARKLKADG

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MDAKDILGLP KNALLNSQEK KAKPPKEPQR KPDGISREVY MLTGGVAPLM PAIDASQLKK  60
RPPTDEKVTW QWLSFTNSAR KDNLELYHWV RVVNGVPPTG DYPFAKYNKS VEVIKYTDEE  120
YEKYLTDPKW TKEETDTLFD FCERFDLRFI LIADRFPSPR TVEELKDRYY NVCRAILIAR  180
APSPADVSGH PLVKEGYNAK QETERKRALS MVLSQTKLQE RKDAEVLAEA KRIQESRMLA  240
KGAEEPELPS ASDVGAEHAD RIALPGSVSP VAAAPTAAAD NATQASLRML RVYLRTYALD  300
QMVQAASASA GLRTIKRVEQ TLQDLGVNLK PKIPTKAVCS EHLELRKEIL TLLNLQKQLQ  360
YKEAEGSSYR EGSFTETPGT PKRTPRPGDQ DRPFVPEPLS FGGDRVGKRD QKRKGPGRSS  420
DAPSSPATKR ARKLKADG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	2e-23	101	186	4	93	DNA methyltransferase 1-associated protein 1
4iej_A	2e-23	101	186	4	93	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010679468.1	0.0	PREDICTED: SWR1-complex protein 4 isoform X1
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A0K9RJG5	0.0	A0A0K9RJG5_SPIOL; Uncharacterized protein
STRING	XP_010679468.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]