PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_122120_oezy.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 25140 Da PI: 8.7028 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.3e-10 | 50 | 102 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + hn+ E+ RR ++N+ + r+llP + ++kK s i +A +YI +Lq Bv5_122120_oezy.t1 50 KLDHNAKEKVRRMKLNETYLAFRSLLPDS--KRAKKrWSAPYIIDRALDYIPQLQ 102 678*************************6..377777*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.68E-13 | 40 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-10 | 48 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.579 | 48 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.36E-5 | 49 | 106 | No hit | No description |
Pfam | PF00010 | 3.0E-7 | 50 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MQYYCPTTTT TTTTIAVAAS AATMMINDQA APPPGVCRGG GGGEGSSSKK LDHNAKEKVR 60 RMKLNETYLA FRSLLPDSKR AKKRWSAPYI IDRALDYIPQ LQAEIEKLTL EKKNMLTMLE 120 KKQQLVERSK DHNNATEDKK TLTVSMNEVK IGEVIVQICE QNNKIGMLPT LIEKLEGESM 180 QIVGASSQRA CEDRSCFHIH VQMGENPVEA DYVAILHKKI ISWLS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019105369.1 | 1e-166 | PREDICTED: uncharacterized protein LOC104894793 isoform X2 | ||||
TrEMBL | A0A0K9RLF1 | 1e-102 | A0A0K9RLF1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679419.1 | 1e-169 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71200.1 | 2e-26 | bHLH family protein |