PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_121880_touz.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | WRKY | ||||||||
Protein Properties | Length: 255aa MW: 29270.3 Da PI: 9.2041 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.7 | 1.3e-29 | 56 | 114 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D y+WrKYGqK vkgs++p++YYrC+++ gC +kk+ver++ed ++++itY + Hnh+ Bv5_121880_touz.t1 56 SDSYSWRKYGQKLVKGSPYPKGYYRCSTSkGCLAKKQVERCKEDASILIITYFSAHNHP 114 69************************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-30 | 48 | 115 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-26 | 52 | 115 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-35 | 55 | 115 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.541 | 56 | 116 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-24 | 57 | 114 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MNDASTSTSP KIWKDNSISR NQASNKRKMQ DEKKVVTIKI EAEKGDSQLK KNGPPSDSYS 60 WRKYGQKLVK GSPYPKGYYR CSTSKGCLAK KQVERCKEDA SILIITYFSA HNHPTQSPQS 120 PTSTQTHKAP KKKAQFQAQV NEAHSRPKQE QPSNDNKGNN VENTPNDQGQ QGHFHYIQSP 180 TYCSNDTTKM EKQHEEKPYV VSFDNITPFD SQNNFDVVDD QYLQQNNDFF DELNELDFIR 240 NNNVFDQKKF KTSLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-17 | 57 | 113 | 16 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679393.1 | 0.0 | PREDICTED: probable WRKY transcription factor 69 | ||||
STRING | XP_010679393.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 4e-31 | WRKY DNA-binding protein 69 |