PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_121620_pazn.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | B3 | ||||||||
Protein Properties | Length: 612aa MW: 70493 Da PI: 8.805 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.3 | 8.8e-11 | 3 | 87 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +ps+ +k+ l++pk+fa + ++ + +l+ ++g++ +v+l ++ ++++GW+eFv+ + f+vFk++g+s+f +v++f+ Bv5_121620_pazn.t1 3 SPSSQFKK--LRIPKNFAGKLRNE-DC-NVAILNVPTGETRKVEL--VEEENELWFGNGWQEFVEYFSIGFAYFLVFKYEGNSNF--LVHIFN 87 45555655..9*******888533.34.4667777**********..999999****************************9999..999986 PP | |||||||
2 | B3 | 52 | 1.3e-16 | 189 | 281 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 ff + ++++vl++g l +p +f ++h +++ e k ++le +gr+Wev++ + ++ + +++GW F++ gL++gD++ F+l++ Bv5_121620_pazn.t1 189 FFVADMKPYVLNKGFLNIPLHFGRRHlrcKLN--ECKLVKLEAYDGRQWEVNCFLDYRK--MAFRQGWMMFARHIGLEAGDICAFELINAk 275 788899*********************88777..6679***************555554..5699**********************9875 PP SEE..E CS B3 88 sefelv 93 ++++ + Bv5_121620_pazn.t1 276 KTKKST 281 555544 PP | |||||||
3 | B3 | 31.8 | 2.5e-10 | 337 | 426 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 fk +++ + +++ l++p +fa+ +++ e s+t +l+ ++g++ ev+l k +++ ++ +GW+eF + + f++F +dg+s+f Bv5_121620_pazn.t1 337 FKLILTPISQSKK-LRIPDNFARIYSN--ELSTTSILKVPTGETQEVTL--LKEDNQLWFHNGWQEFMEYYSISYAFFLLFNYDGNSKF-- 420 5555555555554.********88864..48999***************..**********************************9999.. PP EEEEE- CS B3 93 vvkvfr 98 v +f+ Bv5_121620_pazn.t1 421 SVLIFN 426 888876 PP | |||||||
4 | B3 | 48.1 | 2.1e-15 | 503 | 600 | 1 | 98 |
EEEE-..-HHHHTT-.EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgr.lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ff + ++s++l +g+ l ++ f+++h +g+ ++ ++le +gr+W+v++ k++ r+++++GW F+++ gL++gD++vF++++ Bv5_121620_pazn.t1 503 FFVTDIKSYALDTGLyLNVSLAFVRDHlgcKGDVTK--SVKLEAYDGRQWKVRC--IKGQYRCTFGSGWIIFAREVGLEVGDICVFERTRA 589 666777777777763146778899999*98555445..6***************..89999999***********************8877 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +e l+v++ + Bv5_121620_pazn.t1 590 EECLLKVHIAK 600 54447777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.0E-5 | 1 | 89 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.518 | 1 | 89 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-15 | 2 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.90E-6 | 2 | 87 | No hit | No description |
Pfam | PF02362 | 7.2E-9 | 4 | 87 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.49E-14 | 9 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-17 | 184 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-16 | 185 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.69E-15 | 188 | 275 | No hit | No description |
Pfam | PF02362 | 2.5E-14 | 189 | 281 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-10 | 189 | 291 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.308 | 189 | 288 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-18 | 334 | 430 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.40E-10 | 334 | 426 | No hit | No description |
SuperFamily | SSF101936 | 1.92E-17 | 335 | 430 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.151 | 335 | 428 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-7 | 336 | 426 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-9 | 336 | 428 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-17 | 497 | 601 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-16 | 499 | 605 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.9E-13 | 503 | 601 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.08E-14 | 503 | 598 | No hit | No description |
SMART | SM01019 | 6.8E-8 | 503 | 602 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.025 | 504 | 602 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MLSPSSQFKK LRIPKNFAGK LRNEDCNVAI LNVPTGETRK VELVEEENEL WFGNGWQEFV 60 EYFSIGFAYF LVFKYEGNSN FLVHIFNLTA CEITYPCNAS NNVSKVRHEP CVKGNEYDKE 120 EKPEISQKKS DVEVQQLDSE DDQYISDNEE VFNARKGVRP VGNPLWFKKH EELLKVAIAA 180 GISMPKNPFF VADMKPYVLN KGFLNIPLHF GRRHLRCKLN ECKLVKLEAY DGRQWEVNCF 240 LDYRKMAFRQ GWMMFARHIG LEAGDICAFE LINAKKTKKS TIIVVSKKRK SKHTFITFTP 300 ITYILYMKKS SMNPKTNKEE EKIIHRNYGV IKPRSFFKLI LTPISQSKKL RIPDNFARIY 360 SNELSTTSIL KVPTGETQEV TLLKEDNQLW FHNGWQEFME YYSISYAFFL LFNYDGNSKF 420 SVLIFNPTAC EISYQRNPSN SISKEQCEIC PEKMNGDNEE ITSDTKEDTL FGHGYSMSRA 480 SKNYEALMKD VVAAGISRPK RPFFVTDIKS YALDTGLYLN VSLAFVRDHL GCKGDVTKSV 540 KLEAYDGRQW KVRCIKGQYR CTFGSGWIIF AREVGLEVGD ICVFERTRAE ECLLKVHIAK 600 KSQINAASIS SA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679360.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0K9S443 | 6e-91 | A0A0K9S443_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679360.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-31 | B3 family protein |